Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,491,805 – 3,491,896 |
Length | 91 |
Max. P | 0.657636 |
Location | 3,491,805 – 3,491,896 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 78.55 |
Mean single sequence MFE | -19.68 |
Consensus MFE | -12.46 |
Energy contribution | -12.10 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.31 |
Mean z-score | -1.47 |
Structure conservation index | 0.63 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.657636 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3491805 91 + 22224390 AUAAAAACAUAAAAUCGCUUGCAAGAGCCGCGCGUUCAUGCGGAAGCUAAUUGAUUUUUUAUAUCCCCAUUAAG---GGAAUGGGCGAAUAACG-- ................((((....))))(((.((((((.((....))....))).........((((......)---)))))).))).......-- ( -20.50) >DroPse_CAF1 536 85 + 1 -AAAAGCCAUAAAAAUGCCUGCAAAAGUUGCGCAUUCGAGCGAAAGCUAAUUGAUUUUUUAUAUC-CUGC-------AGAGUGUGCAAACACCA-- -...((.(((....))).)).......((((((((((.(((....)))....(((.......)))-....-------.))))))))))......-- ( -19.80) >DroSim_CAF1 625 90 + 1 AUAAAAACAUAAAAUCGCUUGCAAGAGCCGCGCGUUCACGCGGAAGCUAAUUGAUUUUUUAUAUC-CCAUUAAG---GGAAUGGGCGAAUAACG-- ..............((((((...((..(((((......)))))...))...............((-((.....)---)))..))))))......-- ( -22.40) >DroEre_CAF1 824 90 + 1 AUAAAAACAUAAAAUCGCUUGCAAGAGCCGCGCGUUCAGGCGGAAGCUAAUUGAUUUUUUAUAUC-CCAUUAAG---GGAAUGGGCGAAUAACG-- ................((((....))))(((.(((((.(((....))).................-((.....)---)))))).))).......-- ( -21.60) >DroAna_CAF1 2746 95 + 1 AUAAAAACAUAAAAACGACUGCAAGAGCUGAGCAUUCAAGCGGAAGCUAAUUGAUUUUUUAUAUC-CCAUUACGGAAGGAAAAAGCGCACAACAUC ...................(((...((((..((......))...))))......((((((...((-(......)))..))))))..)))....... ( -14.00) >DroPer_CAF1 547 85 + 1 -AAAAGCCAUAAAAAUGCCUGCAAAAGUUGCGCAUUCGAGCGAAAGCUAAUUGAUUUUUUAUAUC-CUGC-------AGAGUGUGCAAACACCA-- -...((.(((....))).)).......((((((((((.(((....)))....(((.......)))-....-------.))))))))))......-- ( -19.80) >consensus AUAAAAACAUAAAAACGCCUGCAAGAGCCGCGCAUUCAAGCGGAAGCUAAUUGAUUUUUUAUAUC_CCAUUAAG___GGAAUGGGCGAACAACA__ ............................(((.(((((..((....)).....(((.......))).............))))).)))......... (-12.46 = -12.10 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:00 2006