Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 473,848 – 473,956 |
Length | 108 |
Max. P | 0.772680 |
Location | 473,848 – 473,956 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 91.08 |
Mean single sequence MFE | -18.82 |
Consensus MFE | -15.20 |
Energy contribution | -15.00 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.12 |
Mean z-score | -1.59 |
Structure conservation index | 0.81 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.772680 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 473848 108 - 22224390 CAUUCCGUUAAUAUUCCCUUUCUGGCAACUCCAUUGUUGUUGCUGUCUCUCGUUGAAGGGCAAGCAGAUCUCCCCUCUCAUUCGCUCUCCCACCCAACAUCCUGUUUU .......................((((((.........)))))).......((((..(((..(((.((.............)))))..)))...)))).......... ( -17.52) >DroSec_CAF1 5815 108 - 1 CAUUCAAUUUCUGUUCCCUUUCUGGCAACUCCAUUGUUGUUGCUGCCUCUCGUUGAAGGGCAAGCAGAUCUCCCCUCUCAUCCCCUCUUUCACCCAACAUCCUGAUUU .........((((((((((((..((((.(..((....))..).)))).......))))))..))))))........................................ ( -17.90) >DroSim_CAF1 5842 108 - 1 CAUUCAAUUACUGUUCCCUUUCUGGCAACUCCAUUGUUGUUGGUGCCUCUCGUUGAAGGGCAAGCAGAUCUCCCCUCUCAUCCCCUCUUCCACCCAACAUCCUGAUUU ..........(((((......(..(((((......)))))..)((((..((...))..)))))))))......................................... ( -19.50) >DroEre_CAF1 5935 104 - 1 CAUUCAAUUACUGUUCCCUUUCUGGCAACUCCAUUGUUGUCGCUGCCUCUCGUUGAAGGGCAAGCAGAUCUCCGCUCUCACUCGCUCU----CCCAACAUCCUGUUUU ...........((((.....(((((((((......))))))((((((..((...))..))).)))))).....((........))...----...))))......... ( -19.60) >DroYak_CAF1 5972 104 - 1 CAUUCAAUUACUGUUCCCUUUCUGGCAACUCCAUUGUUGUCGCUGCCUCUCGUUGAAGGGCAAGCAGAUCUCCGCUCUCCCUCGCUCU----CCCAACAUCCUGUUUU ...........((((.....(((((((((......))))))((((((..((...))..))).)))))).....((........))...----...))))......... ( -19.60) >consensus CAUUCAAUUACUGUUCCCUUUCUGGCAACUCCAUUGUUGUUGCUGCCUCUCGUUGAAGGGCAAGCAGAUCUCCCCUCUCAUUCGCUCU__CACCCAACAUCCUGUUUU ....................(((((((((......))))))((((((..((...))..))).))))))........................................ (-15.20 = -15.00 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:42 2006