Locus 117

Sequence ID X_DroMel_CAF1
Location 473,848 – 473,956
Length 108
Max. P 0.772680
window154

overview

Window 4

Location 473,848 – 473,956
Length 108
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 91.08
Mean single sequence MFE -18.82
Consensus MFE -15.20
Energy contribution -15.00
Covariance contribution -0.20
Combinations/Pair 1.12
Mean z-score -1.59
Structure conservation index 0.81
SVM decision value 0.53
SVM RNA-class probability 0.772680
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 473848 108 - 22224390
CAUUCCGUUAAUAUUCCCUUUCUGGCAACUCCAUUGUUGUUGCUGUCUCUCGUUGAAGGGCAAGCAGAUCUCCCCUCUCAUUCGCUCUCCCACCCAACAUCCUGUUUU
.......................((((((.........)))))).......((((..(((..(((.((.............)))))..)))...)))).......... ( -17.52)
>DroSec_CAF1 5815 108 - 1
CAUUCAAUUUCUGUUCCCUUUCUGGCAACUCCAUUGUUGUUGCUGCCUCUCGUUGAAGGGCAAGCAGAUCUCCCCUCUCAUCCCCUCUUUCACCCAACAUCCUGAUUU
.........((((((((((((..((((.(..((....))..).)))).......))))))..))))))........................................ ( -17.90)
>DroSim_CAF1 5842 108 - 1
CAUUCAAUUACUGUUCCCUUUCUGGCAACUCCAUUGUUGUUGGUGCCUCUCGUUGAAGGGCAAGCAGAUCUCCCCUCUCAUCCCCUCUUCCACCCAACAUCCUGAUUU
..........(((((......(..(((((......)))))..)((((..((...))..)))))))))......................................... ( -19.50)
>DroEre_CAF1 5935 104 - 1
CAUUCAAUUACUGUUCCCUUUCUGGCAACUCCAUUGUUGUCGCUGCCUCUCGUUGAAGGGCAAGCAGAUCUCCGCUCUCACUCGCUCU----CCCAACAUCCUGUUUU
...........((((.....(((((((((......))))))((((((..((...))..))).)))))).....((........))...----...))))......... ( -19.60)
>DroYak_CAF1 5972 104 - 1
CAUUCAAUUACUGUUCCCUUUCUGGCAACUCCAUUGUUGUCGCUGCCUCUCGUUGAAGGGCAAGCAGAUCUCCGCUCUCCCUCGCUCU----CCCAACAUCCUGUUUU
...........((((.....(((((((((......))))))((((((..((...))..))).)))))).....((........))...----...))))......... ( -19.60)
>consensus
CAUUCAAUUACUGUUCCCUUUCUGGCAACUCCAUUGUUGUUGCUGCCUCUCGUUGAAGGGCAAGCAGAUCUCCCCUCUCAUUCGCUCU__CACCCAACAUCCUGUUUU
....................(((((((((......))))))((((((..((...))..))).))))))........................................ (-15.20 = -15.00 +  -0.20) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:42 2006