Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,485,565 – 3,485,673 |
Length | 108 |
Max. P | 0.599289 |
Location | 3,485,565 – 3,485,673 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 90.52 |
Mean single sequence MFE | -33.58 |
Consensus MFE | -26.42 |
Energy contribution | -27.93 |
Covariance contribution | 1.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.56 |
Structure conservation index | 0.79 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.599289 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3485565 108 - 22224390 ACCAAAAGCACACUUACUCUCAUGUGAGAGCAGGGGGCAAAAAUGGUGGA-AAAGCGCUUGGAAAAGCGGACGGGCGGAAAAGCGGGUGGUC-------GAGUGGACGAGUCCAUU ((((...((...(((.(((((....))))).)))..)).....))))...-....(((((....)))))(((.(.(.(.....).).).)))-------.((((((....)))))) ( -32.50) >DroSec_CAF1 46233 115 - 1 ACCAAAAGCACACUUACUCUCAUGUGAGAGCAUGGGGCAAA-AUGGUGGGAAAAGCGCUUGGAAAAGCGGACGGGCGGAAAAGCGGGUGGUCGGUGGUUGAGUGGACGAGUCCAUU ..(((..((.((((...((((((((....))))))))....-..)))).......(((((....)))))(((.(.(.(.....).).).))).))..)))((((((....)))))) ( -35.90) >DroSim_CAF1 40669 113 - 1 ACCAAAAGCACACUUACUCUCAUGUGAGAGCAUGGGGCAAA-AUGGUGGGAAAU--GGUGGGAAAAGCGGACGGGCGGAAAAGCGGGUGGUCGGUGGUUGAGUGGACGAGUCCAUU ((((....(.((((...((((((((....))))))))....-..)))).)...)--)))...((..((.(((.(.(.(.....).).).))).))..)).((((((....)))))) ( -31.70) >DroEre_CAF1 49243 108 - 1 ACCAAAAGCACACUCACUCUCAUGUGAGAGCAUGGGGCGAA-AUCGUGGGAAAAGCGGUUGGAAAAGCGGACGGGCGGAAAAGCGGGUGGUC-------GAGUGGACGAGUCCAUU .((((..((...(((((((((((((....)))))))).(..-..))))))....))..))))......((((..((......)).....(((-------.....)))..))))... ( -34.20) >consensus ACCAAAAGCACACUUACUCUCAUGUGAGAGCAUGGGGCAAA_AUGGUGGGAAAAGCGCUUGGAAAAGCGGACGGGCGGAAAAGCGGGUGGUC_______GAGUGGACGAGUCCAUU ((((...((.((((...((((((((....)))))))).......)))).......((((((..........)))))).....))...)))).........((((((....)))))) (-26.42 = -27.93 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:56 2006