Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,483,220 – 3,483,319 |
Length | 99 |
Max. P | 0.976577 |
Location | 3,483,220 – 3,483,319 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 85.19 |
Mean single sequence MFE | -21.83 |
Consensus MFE | -20.71 |
Energy contribution | -20.52 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.08 |
Mean z-score | -2.06 |
Structure conservation index | 0.95 |
SVM decision value | 1.77 |
SVM RNA-class probability | 0.976577 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3483220 99 - 22224390 GUCCUCUGACUUUGGCGCCACACAAUUUUGUGGCCACAUUGAUGUCGCCCACGAAAUGCGAAAGUUUUACUUUCAUAGCCCAUCACCCCCCUCC----------CCCCC (((....)))..(((.((......((((((((((.(((....))).).)))))))))..(((((.....)))))...)))))............----------..... ( -21.80) >DroSec_CAF1 44003 97 - 1 GUCCUCUGACUUUGGCGCCACACAAUUUUGUGGCCACAUUGAUGUCGCCCACAAAAUGCGAAAGUUUUACUUUCAUAGCCCG--ACCCCCCAUA----------CCCCC (((....))).((((.((......((((((((((.(((....))).).)))))))))..(((((.....)))))...)))))--).........----------..... ( -22.60) >DroSim_CAF1 38430 97 - 1 GUCCCCUGACUUUGGCGCCACACAAUUUUGUGGCCACAUUGAUGUCGCCCACAAAAUGCGAAAGUUUUACUUUCAUAGCCCG--ACCCCCCACA----------CCCCC (((....))).((((.((......((((((((((.(((....))).).)))))))))..(((((.....)))))...)))))--).........----------..... ( -22.60) >DroEre_CAF1 46974 88 - 1 GUCCUCUGACUUUGGCGCCACACAAUUUUGUGGCCACAUUGAUGUCGCCCACGAAAUGCGAAAGUUUUACUUUCAUCACCCA-------CUUU--------------CC (((....)))..(((.((((((......)))))).....((((.(((....))).....(((((.....))))))))).)))-------....--------------.. ( -18.80) >DroYak_CAF1 45826 88 - 1 GUCCUCUGACUUUGGCGCCACACAAUUUUGUGGCCACAUUGAUGUCGCCCACGAAAUGCGAAAGUUUUACUUUCAUCGCCCA-------CUUU--------------CC (((....)))...((((.......((((((((((.(((....))).).)))))))))..(((((.....)))))..))))..-------....--------------.. ( -22.60) >DroAna_CAF1 78376 107 - 1 GUUCCCUGACUUUGGCGCCACACAAUUUUGUGGCCACAUUGAUGUCGCCCACGAAAUGCGAAAGUUUUACUUUCAUCGCCUU--GCCCCACUCCCCUGAGCCCUUCCCC .............((((.......((((((((((.(((....))).).)))))))))..(((((.....)))))..))))..--......(((....)))......... ( -22.60) >consensus GUCCUCUGACUUUGGCGCCACACAAUUUUGUGGCCACAUUGAUGUCGCCCACGAAAUGCGAAAGUUUUACUUUCAUAGCCCA__ACCCCCCUC___________CCCCC (((....)))...(((........((((((((((.(((....))).).)))))))))..(((((.....)))))...)))............................. (-20.71 = -20.52 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:55 2006