Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,481,662 – 3,481,757 |
Length | 95 |
Max. P | 0.588963 |
Location | 3,481,662 – 3,481,757 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 83.14 |
Mean single sequence MFE | -21.35 |
Consensus MFE | -15.10 |
Energy contribution | -14.70 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.33 |
Mean z-score | -1.65 |
Structure conservation index | 0.71 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.588963 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3481662 95 + 22224390 GUAGAUCCUUAAUUCUGCUAUCUUUCAUCACUUUUUUUGUCUUUAUUGUGAGGAGAAUUAAAGUGGCUAUAGAUUUGCCAUUACGGGACCAUAAU ...(.((((((((...((.((((....(((((((..((.(((((.....))))).))..)))))))....))))..)).)))).)))).)..... ( -20.80) >DroSec_CAF1 42580 92 + 1 --AGAUCCUUACUUCUGCUAUCUUCCACCAAUUU-UUUGUCUUUAUUGUGACGAGGAUUAAAGUGGCUAUGGAUUUGCCAUUACGGGACCAUAAU --.(.((((.......((.((((.((((....((-((((((........)))))))).....))))....))))..))......)))).)..... ( -19.12) >DroSim_CAF1 36983 92 + 1 --AGAUCCUUACUUCUGCUAUCUUCCACCACUUU-UUUGUCUUUAUUGUGACGAGGAUUAAAGUGGCUAUGGAUUUGCCAUUACGGGAACAUAAU --.(.((((.......((.....(((((((((((-...((((((........)))))).)))))))...))))...))......)))).)..... ( -20.82) >DroEre_CAF1 45503 91 + 1 --GGCUCUUCAAUUCCGCCAUCUUCAACCACUU--UUUGUCUUUAUUGUGACGAGGACAUAAGUGGCUAUGGAUUUGCCAUUACAGGGCCAUAAC --((((((..(((...((.((((....((((((--..(((((((........))))))).))))))....))))..)).)))..))))))..... ( -26.90) >DroYak_CAF1 44432 91 + 1 --GGAUAUUUACUUCUGCCAUUUUCAACCACUU--UCUGUCUUUAUUGUGAUGGGGAUAAAAGUGAAAAUGGAUUUGCCUUUACAGAGCCAUAAU --((.............(((((((((.....(.--.(((((........)))))..)......))))))))).((((......)))).))..... ( -19.10) >consensus __AGAUCCUUACUUCUGCUAUCUUCCACCACUUU_UUUGUCUUUAUUGUGACGAGGAUUAAAGUGGCUAUGGAUUUGCCAUUACGGGACCAUAAU ...(.((((.......((.((((....(((((((.((((((........))))))....)))))))....))))..))......)))).)..... (-15.10 = -14.70 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:55 2006