Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,480,925 – 3,481,015 |
Length | 90 |
Max. P | 0.922114 |
Location | 3,480,925 – 3,481,015 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 73.50 |
Mean single sequence MFE | -31.27 |
Consensus MFE | -16.09 |
Energy contribution | -17.37 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.18 |
Mean z-score | -1.99 |
Structure conservation index | 0.51 |
SVM decision value | 1.15 |
SVM RNA-class probability | 0.922114 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3480925 90 - 22224390 -------CCGUUUCCCGUGCAAAUAUGCGAACUG------GGAAUGGCGAAAGCCAAAGGCGAAGGCCAAAAGGGUUGCGAAACA-------ACUGUGAUUAUUUU----GUUA- -------....((((((((((....))))...))------))))((((....))))..(((....)))((((..((..((.....-------..))..))..))))----....- ( -29.10) >DroSec_CAF1 41818 90 - 1 -------CCGUUUCCCGUGCAAAUAUGCGAACUG------GGAAUGGCAAAAGCCAGAGGCGGUGGCCAAAAGGGUUGCGAAACA-------ACUGCGCUGGGUUU----GUCA- -------....((((((((((....))))...))------))))(((((((..((((..(((((..((....))(((....))).-------))))).)))).)))----))))- ( -30.20) >DroSim_CAF1 36218 97 - 1 CCGCUUUCCGUUUCCCGUGCAAAUAUGCGAACUG------GGAAUGGCAAAAGCCAGAGGCGGAGGCCAAAAGGGUUGCGAAACA-------ACUGCGCUGGGUUU----GUCA- (((((((....((((((((((....))))...))------))))((((....)))))))))))(((((....((((((.....))-------))).)....)))))----....- ( -31.70) >DroEre_CAF1 44656 104 - 1 -------CCGUUUCCCGUGCAAAUAUGCCAACUGGCACUGGCAGUGGCGAAAGCCAGAGGCGGAGGCCAAAAGGGUUGCGAAACGGUUGGUUGCUACGAAAGUGCG----GCCUU -------(((((((....(((.....(((...((((.(((.(..((((....))))..).)))..))))....)))))))))))))..((((((.((....)))))----))).. ( -45.90) >DroYak_CAF1 43611 90 - 1 -------CCGUUUCCCGUGCAAAUAUGCGAACUG------GAAAUGGCGAAAGCCAGGGGCGGAGGCCGAAAGGGUUGCGAAACA-------ACUACGAAGGACUU----GUCA- -------((((..((((((((....))))...))------)...((((....)))))..))))(((((.....(((((.....))-------))).....)).)))----....- ( -29.70) >DroAna_CAF1 72487 93 - 1 -------CCGUUUCCUGUGCAAAUAUGCAAUCUGG-----GGAAUGGCAAAGAUCCAAGUGUGGGGCGAAAAGGAUUC--AAAAA-------ACUAUAAUGGGAGCAAAAGAUA- -------(((((((((.((((....))))....))-----)))))))....(.(((...(((((...(((.....)))--.....-------.)))))...))).)........- ( -21.00) >consensus _______CCGUUUCCCGUGCAAAUAUGCGAACUG______GGAAUGGCAAAAGCCAGAGGCGGAGGCCAAAAGGGUUGCGAAACA_______ACUACGAUGGGUUU____GUCA_ ........(((..(((.((((....))))...............((((....))))..(((....)))....)))..)))................................... (-16.09 = -17.37 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:54 2006