Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,478,685 – 3,478,799 |
Length | 114 |
Max. P | 0.652935 |
Location | 3,478,685 – 3,478,799 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 76.58 |
Mean single sequence MFE | -20.60 |
Consensus MFE | -0.74 |
Energy contribution | -0.78 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.33 |
Mean z-score | -1.40 |
Structure conservation index | 0.04 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.652935 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3478685 114 + 22224390 ACACAAGCGAAGCACUUAAAUGC-CACGUUUUUGC---GGCGCCACAACAACCAACUUUU-UGGGGUGGCGACCAAAAAACCGUAGAUCCGUCAAAUCCGAAAUAUCAAAACAAAUUAC ......(((..(((......)))-...((((((..---((((((((..(((........)-))..)))))).)).))))))))).(((...((......))...)))............ ( -26.00) >DroSec_CAF1 39653 111 + 1 GCCCAAGCGAAGCACUUAAAUGC-CACGUUUUUGU---GACGCCACAACAACCAACUUUU-UUGGG-GGCAACCAAA-AACCAGAGAUCAGUCAAAU-AGAAAUAUCAAAACAAAUUAC (((((((((..(((......)))-..)))))((((---(....)))))...((((.....-)))))-))).......-.......(((...((....-.))...)))............ ( -21.10) >DroEre_CAF1 42482 109 + 1 GACUAACCGAACCGCUUAAAUGG-CAGGUUUUCGU---GGCGCCACAACAGCCAACUUUU-UGG---GGCGACCAAA-AACCAGAAAUCCGUCAAAU-AGAAAUAUCAAAACAAAUUAC (((..........(((.....))-).((((((..(---((((((.(((.((....))..)-)).---)))).)))))-))))........)))....-..................... ( -22.80) >DroYak_CAF1 41363 109 + 1 GACUAACCAAACCACUUAAAUGU-CAGGUUUUCGU---UAUGCCACAACAGCGAACUUUU-UGG---GGCGAGCAAA-AACCAGAAAUCCGUCAAAU-AGAAAUAUCAAAACAAAUUAC (((..........((......))-..((((((.((---(.((((.(((.((....))..)-)).---))))))).))-))))........)))....-..................... ( -16.10) >DroAna_CAF1 69081 113 + 1 AACUUAACAACAAAAUCAAAUUUUCAGUUUUGUAUAAAUGCGUCAUAAUAAGCGGAUUUUGUGU---GGACU-CCAA-AGCCAGAAAUCCGUCAAAU-AGAAAUAUCAAAACAAAUUAC ..........................((((((...................(((((((((...(---((.((-....-))))))))))))))...((-(....)))))))))....... ( -17.00) >consensus GACUAACCGAACCACUUAAAUGC_CAGGUUUUUGU___GGCGCCACAACAACCAACUUUU_UGG___GGCGACCAAA_AACCAGAAAUCCGUCAAAU_AGAAAUAUCAAAACAAAUUAC .........................................(((.......................)))................................................. ( -0.74 = -0.78 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:53 2006