Locus 116

Sequence ID X_DroMel_CAF1
Location 469,318 – 469,435
Length 117
Max. P 0.636181
window153

overview

Window 3

Location 469,318 – 469,435
Length 117
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.26
Mean single sequence MFE -35.54
Consensus MFE -24.02
Energy contribution -23.88
Covariance contribution -0.13
Combinations/Pair 1.42
Mean z-score -1.56
Structure conservation index 0.68
SVM decision value 0.21
SVM RNA-class probability 0.636181
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 469318 117 - 22224390
GGCCAACGACUUUAAGACUGAGGCGCUCAGCGCCCGGGAGCAGCUAGUUCUCGACAACAAGACGCAGAAAGAAAAGAUCAGACUGUUGGAGCAGCAGCUUGAAAAACUUAC---CAAACA
((........((((((.(((((((((...)))))(((((((.....)))))))........................)))).((((((...)))))))))))).......)---)..... ( -29.16)
>DroGri_CAF1 1874 117 - 1
GGCCAACGAUUUCAAGACUGAGGCGCUCAGCGCACGCGAGCAGCUCGUGCUCGAUAACAAAUUACAAAAGGACAAGAUUCGGCUGCUCGAACAGCAGCUGGACAAGUUAAC---CAAGCA
((..(((...........((((((((...)))).((((((...))))))))))........................((((((((((.....))))))))))...)))..)---)..... ( -32.10)
>DroWil_CAF1 1202 119 - 1
UGCCAAUGAUUUCAAGACUGAGGCGCUUAGCGCUCGGGAGCAGCUGCUGCUCGAGAAUAAAACGCAGAAGGAGAAAAUACGAUUGCUGGAACAGCAAUUGGACAAACUGAACACU-AAAA
(((......((((....(((((.(((...))))))))((((((...)))))))))).......))).............(((((((((...)))))))))...............-.... ( -31.62)
>DroMoj_CAF1 1445 117 - 1
UGCCAACGAUUUCAAGACUGAGGCGCUCAGCGCACGCGAGCAGCUGGUGCUCGACAACAAGACGCAAAAGGAAAAAAUCCGGCUGCUCGAACAGCAGCUGGACAAACUAAC---CAAACA
.(((.................)))(..((((((...((((((((((((((((........)).)))............)))))))))))....)).))))..)........---...... ( -36.23)
>DroAna_CAF1 1270 117 - 1
GGCGAACGACUUCAAGACUGAGGCGCUCAGCGCCCGGGAGCAGCUGGUGCUCGACAACAAGACGCAGAAGGAGAAGAUCCAUCUCCUGGAGCAGCAGCUCGACAAGCUAAC---CAAGCA
.(((((....)))....(((.(((((...))))))))..))(((((.((((((....)..........((((((.......)))))).))))).)))))......(((...---..))). ( -38.60)
>DroPer_CAF1 1226 120 - 1
UGCAAACGACUUCAAGACUGAGGCGCUAAGCGCUCGCGAGCAGCUCCUGCUCGACAACAAGACGCAAAAGGAGAAGAUCCGGCUGCUGGAGCAGCAGCUGGAGAAGCUCACCCCUAAGCA
.......(.(((((....))))))(((..(((((..(((((((...)))))))......)).))).....(((....(((((((((((...)))))))))))....))).......))). ( -45.50)
>consensus
GGCCAACGACUUCAAGACUGAGGCGCUCAGCGCACGCGAGCAGCUGGUGCUCGACAACAAGACGCAAAAGGAGAAGAUCCGGCUGCUGGAACAGCAGCUGGACAAACUAAC___CAAACA
.........((((........(((((...)))))...(((((.....)))))....................)))).((((((((((.....)))))))))).................. (-24.02 = -23.88 +  -0.13) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:41 2006