Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,452,010 – 3,452,109 |
Length | 99 |
Max. P | 0.954356 |
Location | 3,452,010 – 3,452,109 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 91.01 |
Mean single sequence MFE | -24.50 |
Consensus MFE | -19.10 |
Energy contribution | -19.10 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.30 |
Structure conservation index | 0.78 |
SVM decision value | 1.44 |
SVM RNA-class probability | 0.954356 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3452010 99 - 22224390 AACAAACAAGUCAAUUGGCUGGAAAGCUGAUGAAAAAUAGCGCCAUUCCGCUGGCA--AAGUUAAGUCAACGCAUGUGAAUUGCGUCAUAAGCUAAAGUAA ..........(((.(..(((....)))..))))....((((((((......)))).--...........(((((.......))))).....))))...... ( -24.20) >DroSec_CAF1 24099 93 - 1 ----AACAAGUCAAUUGGCUGGAAAGCUGAUGAAAAAUAGCGCCAUUCCGCUGGCA--AAGUU--GCCAACGCAUGUGAAUUGCGUCAUAAGCUAAAGUAA ----......(((.(..(((....)))..))))....((((((......))(((((--....)--))))(((((.......))))).....))))...... ( -24.50) >DroSim_CAF1 23799 87 - 1 ----AACAAGUCAAUUGGCUGGAAAGCUGAUGAAAAAUAGCGCCAUUCCGCUGGCA--AAGUU--GUCAACGCAUGUGAAUUGCGUCAUAA------GUAA ----.((((.(((.(..(((....)))..))))........((((......)))).--...))--))..(((((.......))))).....------.... ( -20.50) >DroEre_CAF1 27363 95 - 1 ----AACAAGUCAAUUGGCUGGAAAGCUGAUGAAAAAUAGCGCCAUUUCGCUGGCAAAAAGUU--GCCAACGCAUGUGAAUUGCGUCAUAAGCUAACGUAA ----.((...(((.(..(((....)))..))))....((((((......))((((((....))--))))(((((.......))))).....))))..)).. ( -25.50) >DroYak_CAF1 25417 94 - 1 ----AACAAGUCAAUUGGCUGGAAAGCUGAUGAAAAAUAGCGGUAUUCCGCUGG-AAAAAGUU--GGCAACGCAUGUGAAUUGCGUCAUAAGCUAAAGUAA ----..........((((((.((..((..((......((((((....)))))).-.....)).--.))..((((.......))))))...))))))..... ( -27.80) >consensus ____AACAAGUCAAUUGGCUGGAAAGCUGAUGAAAAAUAGCGCCAUUCCGCUGGCA__AAGUU__GCCAACGCAUGUGAAUUGCGUCAUAAGCUAAAGUAA ....(((...(((.(..(((....)))..))))....(((((......))))).......)))......(((((.......)))))............... (-19.10 = -19.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:45 2006