Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,450,405 – 3,450,521 |
Length | 116 |
Max. P | 0.562285 |
Location | 3,450,405 – 3,450,521 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 94.86 |
Mean single sequence MFE | -29.46 |
Consensus MFE | -25.32 |
Energy contribution | -25.80 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.03 |
Mean z-score | -1.26 |
Structure conservation index | 0.86 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.562285 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3450405 116 - 22224390 UUUUACAGUGUAGAGAGAGGGUGGAAAGGCAAACCGAUCGACGCGUGACUCUCGCUUAAAAGCGUUUCACGUUUUCUUUUUGCACCACUUUCCCUUCAGUUUUCUUGCUU-UUGCAU .......(((((((((((((((.((..((....))..)).))((((((....((((....))))..)))))))))))))))))))....................(((..-..))). ( -32.50) >DroSec_CAF1 22543 117 - 1 UUUUACAGUGUAGAGAGAGGAUAGAAAGGCAAACCGCUCGACGCGUGACUCUCGCUUAAAAGCAUUCCACGUUUUCUUUUUGCACCACUUUCCCUUCAGUUUGCUUGCUUUUUGCAU .......(((((((((((((((.((.((.((...(((.....))))).)).))(((....))).......)))))))))))))))....................(((.....))). ( -25.50) >DroSim_CAF1 22625 117 - 1 UUUUACAGUGUAGAGAGAGGGUAGAAAGGCAAACCGCUCGACGCGUGACUCUCGCUUAAAAGCGUUCCACGUUUUCUUUUUGCACCACUUUCCCUUCAGUUUGCUUGCUUUUUGCAU .......((((((((((.(((((((((((.((((.((.....))(((.....((((....))))...)))))))))))))))).))(((........))).......)))))))))) ( -29.10) >DroEre_CAF1 25815 115 - 1 UUUUCCAGUGUAGAGAGAGGGUAGAAAGGCAAACCGCUCGACGCGUGACUCUCGCU-AAAAGCGUUCCACGUUUUCUUUUUGCACCACUCUCCCUUCACUUUUCUUGUUU-UUCCAU ......((((..(((((.(((((((((((.((((.((.....))(((.....(((.-....)))...)))))))))))))))).)).)))))....))))..........-...... ( -31.00) >DroYak_CAF1 23809 116 - 1 UUUUACAGUGUAGAGAGAGGGUAGAAAGGCAAACCGCUCGACGCGUGACUCUCGCUUAAAAGCGUUUCACGUUUUCUUUUUGCACCACUUUCCCUUCAGUUUUCUUGUUU-UUGCAU .......(((((((((.((((((((((((.((((.((.....))((((....((((....))))..)))))))))))))))))...(((........)))...))).)))-)))))) ( -29.20) >consensus UUUUACAGUGUAGAGAGAGGGUAGAAAGGCAAACCGCUCGACGCGUGACUCUCGCUUAAAAGCGUUCCACGUUUUCUUUUUGCACCACUUUCCCUUCAGUUUUCUUGCUU_UUGCAU .......(((((((((((((((.((..((....))..)).))(((((.....((((....))))...))))))))))))))))))....................(((.....))). (-25.32 = -25.80 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:44 2006