Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,445,967 – 3,446,063 |
Length | 96 |
Max. P | 0.638282 |
Location | 3,445,967 – 3,446,063 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 97.74 |
Mean single sequence MFE | -21.82 |
Consensus MFE | -19.85 |
Energy contribution | -20.10 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.04 |
Mean z-score | -1.80 |
Structure conservation index | 0.91 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.621346 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3445967 96 + 22224390 UUUUAAGACGACUUAACCGUUGACCCAGGCAUCCUGUUCAUUGCCUCGAGUCGUCGCCUCCGCUCUGAAGAACUUUCACAUCACUGCGCAUUAAUA ......((((((((...((.(((..((((...)))).))).))....)))))))).....(((..(((.(........).)))..)))........ ( -21.00) >DroSec_CAF1 18184 96 + 1 UUUUAAGACGACUUAACCGUUGACCCAGGCAUCCUGUUCAUUGCCUCGAGUCGUCGCCUCCGCUCUGAAGAACUUUCACAUCACUGCGCAUUAAUA ......((((((((...((.(((..((((...)))).))).))....)))))))).....(((..(((.(........).)))..)))........ ( -21.00) >DroEre_CAF1 20686 96 + 1 UUUUAAGACGACUUAACCAUUGACCCUGGCAUCCUGUUCAUUGCCUCGAGUCGUCGCCUGCGCUCUGAACAACUUUCACAUCACUGCGCAUUAAUA ......((((((((.............((((..........))))..))))))))...(((((..(((............)))..)))))...... ( -23.06) >DroYak_CAF1 19459 96 + 1 UUUUAAGACGACUUAACCAUUGACCCAGGCAUCCUGUUCAUUGCCUCGAGUCGUCGCCUCCGCUCUGAAGAACUUUCACAUCACUGCGCAUUAAUA ......((((((((...((.(((..((((...)))).))).))....)))))))).....(((..(((.(........).)))..)))........ ( -22.20) >consensus UUUUAAGACGACUUAACCAUUGACCCAGGCAUCCUGUUCAUUGCCUCGAGUCGUCGCCUCCGCUCUGAAGAACUUUCACAUCACUGCGCAUUAAUA ......((((((((...((.(((..((((...)))).))).))....)))))))).....(((..(((.(........).)))..)))........ (-19.85 = -20.10 + 0.25)
Location | 3,445,967 – 3,446,063 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 97.74 |
Mean single sequence MFE | -28.88 |
Consensus MFE | -25.77 |
Energy contribution | -26.53 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -1.90 |
Structure conservation index | 0.89 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.638282 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3445967 96 - 22224390 UAUUAAUGCGCAGUGAUGUGAAAGUUCUUCAGAGCGGAGGCGACGACUCGAGGCAAUGAACAGGAUGCCUGGGUCAACGGUUAAGUCGUCUUAAAA ........((((....))))...((((....)))).(((((((((((((.(((((..........)))))))))).........)))))))).... ( -29.20) >DroSec_CAF1 18184 96 - 1 UAUUAAUGCGCAGUGAUGUGAAAGUUCUUCAGAGCGGAGGCGACGACUCGAGGCAAUGAACAGGAUGCCUGGGUCAACGGUUAAGUCGUCUUAAAA ........((((....))))...((((....)))).(((((((((((((.(((((..........)))))))))).........)))))))).... ( -29.20) >DroEre_CAF1 20686 96 - 1 UAUUAAUGCGCAGUGAUGUGAAAGUUGUUCAGAGCGCAGGCGACGACUCGAGGCAAUGAACAGGAUGCCAGGGUCAAUGGUUAAGUCGUCUUAAAA ......(((((..(((............)))..)))))(((((((((((..((((..........)))).)))))..(.....)))))))...... ( -27.40) >DroYak_CAF1 19459 96 - 1 UAUUAAUGCGCAGUGAUGUGAAAGUUCUUCAGAGCGGAGGCGACGACUCGAGGCAAUGAACAGGAUGCCUGGGUCAAUGGUUAAGUCGUCUUAAAA ........((((....))))...((((....)))).(((((((((((((.(((((..........))))))))))..(.....))))))))).... ( -29.70) >consensus UAUUAAUGCGCAGUGAUGUGAAAGUUCUUCAGAGCGGAGGCGACGACUCGAGGCAAUGAACAGGAUGCCUGGGUCAACGGUUAAGUCGUCUUAAAA ........((((....))))...((((....)))).(((((((((((((.(((((..........)))))))))).........)))))))).... (-25.77 = -26.53 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:38 2006