Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,442,890 – 3,443,001 |
Length | 111 |
Max. P | 0.688791 |
Location | 3,442,890 – 3,443,001 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 76.87 |
Mean single sequence MFE | -19.74 |
Consensus MFE | -8.00 |
Energy contribution | -9.84 |
Covariance contribution | 1.84 |
Combinations/Pair | 1.13 |
Mean z-score | -1.93 |
Structure conservation index | 0.41 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.688791 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3442890 111 + 22224390 UGGAUCAUAAAUUAUCCAUACCAAAAAAAAAAAAAAAAUAGAAACGAACCGAAAUGCUGCAGUCAGCAAAAGUAUACAUA------UUUAUUUAUGUUUUUUGUUUUUCGGAUUUUC (((((........)))))..............................(((((((((((....)))))((((...(((((------......))))).))))...))))))...... ( -18.40) >DroSec_CAF1 15180 98 + 1 UGGAUCAUAAAUUAUCCAUACCGAA----------AAAUAGAUGCGAACCGAAAUGCUGCAGUAAGCAAAAGUAUACAUG------UUUAUAUAUGUUUUU---UUUCGGGUUUUUC (((((........)))))..(((((----------(((................((((......)))).......(((((------(....))))))..))---))))))....... ( -19.60) >DroSim_CAF1 14924 98 + 1 UGGAUCAUAAAUUAUCCAUACCGAA----------AAAUAGAUGCGAACCGAAAUGCUGCAGUAAGCAAAAGUAUACAUA------UUUAUAUAUGUUUUU---UUUUCGGUUUUUC (((((........))))).......----------..........(((((((((((((......)))).......(((((------(....))))))....---.)))))))))... ( -20.30) >DroEre_CAF1 17641 103 + 1 UGGAUCAUAAAUUAUCCGCACAAAA-------AUAAAAUAGAAGCGAACCAAAAUGCUGCAGUCAGCAACUGUAUAUAUAUAUGUAUUUA--CAAAUAUA-----UAUUCGUUUUAG .((((........))))........-------........((((((((......(((((....)))))......(((((((.(((....)--)).)))))-----)))))))))).. ( -20.40) >DroYak_CAF1 16342 105 + 1 UGGAUCAUAAAUUAUCCAUACAAAA---------AAAAUAGAAACGACCCGAAAUGCUGCAGUCAGCAAAAGUAUAUAUACCCGUAUUUAUACAAAUGUAU---CUAUGCGUUUUUC (((((........)))))...((((---------(..(((((.(((........(((((....)))))...(((((.(((....))).)))))...))).)---))))...))))). ( -20.00) >consensus UGGAUCAUAAAUUAUCCAUACCAAA_________AAAAUAGAAGCGAACCGAAAUGCUGCAGUCAGCAAAAGUAUACAUA______UUUAUAUAUGUUUUU___UUUUCGGUUUUUC (((((........)))))...........................(((((((((((((......))))...(((((............)))))............)))))))))... ( -8.00 = -9.84 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:35 2006