Locus 1150

Sequence ID X_DroMel_CAF1
Location 3,439,352 – 3,439,452
Length 100
Max. P 0.505074
window1849

overview

Window 9

Location 3,439,352 – 3,439,452
Length 100
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.10
Mean single sequence MFE -20.33
Consensus MFE -14.93
Energy contribution -15.10
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -0.90
Structure conservation index 0.73
SVM decision value -0.06
SVM RNA-class probability 0.505074
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3439352 100 + 22224390
---UUCCCUU-UUCUUUU---------------UCAAUUAAAUAUCCAUUUUUGCGAGUGCAAAAC-GCCGCUAAGACAAUAACCGAUGCUAAUGUAUUAUACGUGUCAAUGUGGCCUCG
---.......-.......---------------................((((((....)))))).-(((((...((((......(((((....))))).....))))...))))).... ( -19.90)
>DroSec_CAF1 11785 98 + 1
---UUCC-UU-UCCUUUU---------------UCAAUUAAAUACCCGUUUUUGC-AGUGCAUAAC-GCCGCUAAGACAAUAACCGAUGCUAAUGUAUUAUACGUGUCAAUGUGGCCUCG
---....-..-.......---------------..............(((..(((-...))).)))-(((((...((((......(((((....))))).....))))...))))).... ( -18.20)
>DroSim_CAF1 11649 92 + 1
---UUCC-UU-UCCUUU---------------------UAAAUACCCGUUUUUGC-AGUGCAUAAC-GCCGCUAAGACAAUAACCGAUGCUAAUGUAUUAUACGUGUCAAUGUGGCCUCG
---....-..-......---------------------.........(((..(((-...))).)))-(((((...((((......(((((....))))).....))))...))))).... ( -18.20)
>DroEre_CAF1 14082 117 + 1
ACCUUCCCGC-UUUUUUGGUCU-UACACAAAAAACAAUUAAAUACACAUUUUUCCGAGUGCAGAAC-GCCGCUAAGACAAUAACCGAUGCUAAUGUAUUAUACGUGUCAAUGUGGCCCCG
........(.-(((((((....-....))))))))...........(((((....)))))......-(((((...((((......(((((....))))).....))))...))))).... ( -20.60)
>DroYak_CAF1 12865 118 + 1
ACCUUCCCGC-UGUAUUGUACUCUAAAAAAAAACCAAUUAAAUACCGAUUUUUCCGAGUGCAGAAC-GCCGCUAAGACAAUAACGGAUGCUAAUGUAUUAUACGUGUCAAUGUGGCCUCG
..........-.((.((((((((..(((((..................)))))..)))))))).))-(((((...((((......(((((....))))).....))))...))))).... ( -27.37)
>DroAna_CAF1 19461 97 + 1
---UUCC-UAAUAAGUUU---------------UC--UUAAAUAU--AUUUUUCUGAGUGCGCGACUUCCGCUAAGACAAUAACCGAUGCUAAUGUAUUAUACGUGUCAAUGUGGCCUCA
---....-...((((...---------------.)--))).....--........(((.(((((.....)))...((((......(((((....))))).....))))......))))). ( -17.70)
>consensus
___UUCC_UU_UCCUUUU_______________UCAAUUAAAUACCCAUUUUUCCGAGUGCAGAAC_GCCGCUAAGACAAUAACCGAUGCUAAUGUAUUAUACGUGUCAAUGUGGCCUCG
...................................................................(((((...((((......(((((....))))).....))))...))))).... (-14.93 = -15.10 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:33 2006