Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,434,171 – 3,434,272 |
Length | 101 |
Max. P | 0.543885 |
Location | 3,434,171 – 3,434,272 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 76.69 |
Mean single sequence MFE | -19.14 |
Consensus MFE | -5.06 |
Energy contribution | -5.70 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.38 |
Mean z-score | -1.72 |
Structure conservation index | 0.26 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.543885 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3434171 101 - 22224390 -----UGCUAUAAACAUUUUGCUUCUAUAACUGGAGUAUGGAAAAUGUUUAACGUUUCGUCGU-AUUUUAUGUAAUU-UCCCAAAGUAAAUAUCAUU-UUCCAAAAAAC -----..............((((((.......))))))(((((((((....(((......)))-..(((((......-.......)))))...))))-)))))...... ( -15.22) >DroSec_CAF1 6394 99 - 1 -----UAUGAGAAACAUUUCCCUUCUAUAACUGGAGUACGGAAAAUGUUGUACGUUUCGUCGU-AUUUUGCGUAAUU-UCCCAAAGUAAAUAACAUU-UUCCAAAA--C -----................((((.......))))...(((((((((((((((......)))-((((((.(.....-.).))))))..))))))))-))))....--. ( -19.90) >DroSim_CAF1 6174 99 - 1 -----UAUGAGAAACAUUUCCCUUCUAUAACUGGAGUAUGGAAAAUGUUGUACGUUUCGUCGU-AUUUUGCGUAAUU-UCCCAAAGUAAAUAACAUU-UUCCAAAA--C -----................((((.......))))..((((((((((((((((......)))-((((((.(.....-.).))))))..))))))))-)))))...--. ( -20.60) >DroEre_CAF1 6738 101 - 1 UUGUUGUAAAGAAACAUUUCUUUUCU-----UUGCGAAUGCA-AAUGUUUCACAUUUCGGGGAAAUUUCACGUAAUUUUGCCCAUGUAAAUAUCAUUUUUCCAAAA--U .....(((((((((.......)))))-----))))(((((..-.((((((.((((...((.((((((......)))))).)).)))))))))))))))........--. ( -18.80) >DroYak_CAF1 6431 101 - 1 ---UCCAUAAGAAAUAUUUCCUUUCUGUACUUCGAGUAUGGA-AAUGUUUUAUAUUUCGUGGA-AUUUUACGUAAUUUUCCCAAAGUUAAUAUAAUU-UUCCAAAA--C ---.......(((((((..(.(((((((((.....)))))))-)).)....))))))).((((-(..(((..((((((.....))))))...)))..-)))))...--. ( -21.20) >consensus _____UAUAAGAAACAUUUCCCUUCUAUAACUGGAGUAUGGAAAAUGUUUUACGUUUCGUCGU_AUUUUACGUAAUU_UCCCAAAGUAAAUAUCAUU_UUCCAAAA__C ..........(((((((((((.(((((....)))))...))).)))))))).......................................................... ( -5.06 = -5.70 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:31 2006