Locus 1148

Sequence ID X_DroMel_CAF1
Location 3,434,171 – 3,434,272
Length 101
Max. P 0.543885
window1847

overview

Window 7

Location 3,434,171 – 3,434,272
Length 101
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 76.69
Mean single sequence MFE -19.14
Consensus MFE -5.06
Energy contribution -5.70
Covariance contribution 0.64
Combinations/Pair 1.38
Mean z-score -1.72
Structure conservation index 0.26
SVM decision value 0.02
SVM RNA-class probability 0.543885
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3434171 101 - 22224390
-----UGCUAUAAACAUUUUGCUUCUAUAACUGGAGUAUGGAAAAUGUUUAACGUUUCGUCGU-AUUUUAUGUAAUU-UCCCAAAGUAAAUAUCAUU-UUCCAAAAAAC
-----..............((((((.......))))))(((((((((....(((......)))-..(((((......-.......)))))...))))-)))))...... ( -15.22)
>DroSec_CAF1 6394 99 - 1
-----UAUGAGAAACAUUUCCCUUCUAUAACUGGAGUACGGAAAAUGUUGUACGUUUCGUCGU-AUUUUGCGUAAUU-UCCCAAAGUAAAUAACAUU-UUCCAAAA--C
-----................((((.......))))...(((((((((((((((......)))-((((((.(.....-.).))))))..))))))))-))))....--. ( -19.90)
>DroSim_CAF1 6174 99 - 1
-----UAUGAGAAACAUUUCCCUUCUAUAACUGGAGUAUGGAAAAUGUUGUACGUUUCGUCGU-AUUUUGCGUAAUU-UCCCAAAGUAAAUAACAUU-UUCCAAAA--C
-----................((((.......))))..((((((((((((((((......)))-((((((.(.....-.).))))))..))))))))-)))))...--. ( -20.60)
>DroEre_CAF1 6738 101 - 1
UUGUUGUAAAGAAACAUUUCUUUUCU-----UUGCGAAUGCA-AAUGUUUCACAUUUCGGGGAAAUUUCACGUAAUUUUGCCCAUGUAAAUAUCAUUUUUCCAAAA--U
.....(((((((((.......)))))-----))))(((((..-.((((((.((((...((.((((((......)))))).)).)))))))))))))))........--. ( -18.80)
>DroYak_CAF1 6431 101 - 1
---UCCAUAAGAAAUAUUUCCUUUCUGUACUUCGAGUAUGGA-AAUGUUUUAUAUUUCGUGGA-AUUUUACGUAAUUUUCCCAAAGUUAAUAUAAUU-UUCCAAAA--C
---.......(((((((..(.(((((((((.....)))))))-)).)....))))))).((((-(..(((..((((((.....))))))...)))..-)))))...--. ( -21.20)
>consensus
_____UAUAAGAAACAUUUCCCUUCUAUAACUGGAGUAUGGAAAAUGUUUUACGUUUCGUCGU_AUUUUACGUAAUU_UCCCAAAGUAAAUAUCAUU_UUCCAAAA__C
..........(((((((((((.(((((....)))))...))).)))))))).......................................................... ( -5.06 =  -5.70 +   0.64) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:31 2006