Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,433,458 – 3,433,554 |
Length | 96 |
Max. P | 0.915441 |
Location | 3,433,458 – 3,433,554 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 80.22 |
Mean single sequence MFE | -28.14 |
Consensus MFE | -14.34 |
Energy contribution | -15.40 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.25 |
Mean z-score | -2.90 |
Structure conservation index | 0.51 |
SVM decision value | 1.10 |
SVM RNA-class probability | 0.915441 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3433458 96 + 22224390 UGCAGCAAUUCCGG---CAGUAAUAAUAAUGUUUG--CCAUAAAGCUUAGGAAUUACACCUCAGCCAAAUGCAAAUGUUAUUGUGCUGU--------CUGGGG--U---CUCCA .......(((((((---(((((.((((((((((((--(......(((.(((.......))).))).....)))))))))))))))))).--------))))))--)---..... ( -31.30) >DroPse_CAF1 7157 110 + 1 UGCUGCAAUUUCAGGA-CACUAAUAAGUGCUCUUGCUCCAUAAAGCUUAAGAGUUACACCACAGCCAAAUGCAAAUGUUAUUUUGCUGCUGCCGUUCCUGGAGGUU---UCCCA ........((((((((-.((......(((((((((((......)))..))))).)))....((((.....(((((......))))).))))..))))))))))...---..... ( -26.60) >DroSim_CAF1 5479 96 + 1 UGCAGCAAUUCCGG---CAGUAAUAAUAAUGUUUG--CCAUAAAGCUUAGGAAUUACACCUCAGCCAAAUGCAAAUGUUAUUGUGCUGU--------CUGGGG--U---CCUCA .......(((((((---(((((.((((((((((((--(......(((.(((.......))).))).....)))))))))))))))))).--------))))))--)---..... ( -31.30) >DroEre_CAF1 6000 96 + 1 UGCUACAAUUCCGG---CAGUAAUAAUAAUGUUUG--CCAUAAAGCUUAGGAAUUACACCUCAGACAAAUGCAAAUGUUAUUGUGCUGU--------CUGGGA--U---CCCCA .......(((((((---(((((.((((((((((((--(.......((.(((.......))).))......)))))))))))))))))).--------))))))--)---..... ( -29.32) >DroYak_CAF1 5699 89 + 1 -------AUUCCGG---CAGUAAUAAUAAUGUUUG--CCAUAAAGCUUAGGAAUUACACCUCAGACAAAUGCAAAUGUUAUUGUGCUGU--------CUGGGA--U---CCCAA -------(((((((---(((((.((((((((((((--(.......((.(((.......))).))......)))))))))))))))))).--------))))))--)---..... ( -29.02) >DroAna_CAF1 10173 103 + 1 UGCAGCAGUUCCGGGCUCCAUAAUAAUAAUGCUUG--CCAUAAAGCUUAGGAAUUACACCUUUGCCAAAUGCAAAUGUUAUUGUGUUGU------U-CCAGGG--UUUUCCUUA ............((((..((((((((((....(((--(......((..(((.......)))..)).....)))).))))))))))..))------)-).((((--....)))). ( -21.30) >consensus UGCAGCAAUUCCGG___CAGUAAUAAUAAUGUUUG__CCAUAAAGCUUAGGAAUUACACCUCAGCCAAAUGCAAAUGUUAUUGUGCUGU________CUGGGG__U___CCCCA ........((((((...(((((.((((((((((((...(((...(((.(((.......))).)))...)))))))))))))))))))).........))))))........... (-14.34 = -15.40 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:30 2006