Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,430,120 – 3,430,218 |
Length | 98 |
Max. P | 0.677675 |
Location | 3,430,120 – 3,430,218 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 95.59 |
Mean single sequence MFE | -25.14 |
Consensus MFE | -19.36 |
Energy contribution | -20.36 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.04 |
Structure conservation index | 0.77 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.677675 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3430120 98 - 22224390 AGAACGCAACAGGCGCGCAUGCAAAUUCCCAAAGGAGCAACAAAAUAUUUGUAAACAAAGCGGCUUCGUUUGAGAGACGAAAGCGAAUUUGAGCGCAA .....((.....))((((...(((((((.(((((((((..(......((((....)))))..))))).))))...(.(....))))))))).)))).. ( -24.60) >DroSec_CAF1 2423 97 - 1 AGAACGCAACAGGCGCGCAUGCAAAUUCCCAAAGGAGCAA-AAAAUAUUUGUAAACAAAGCGGCUUCGUUUGUGAGCCGAAAGCGAAUUUGAGCGCAA .....((.....))((((...(((((((((...)).((..-......((((....)))).((((((.......))))))...))))))))).)))).. ( -25.90) >DroSim_CAF1 1382 95 - 1 AGAACGCAACAGGCGCGCAUGCAAAUUCCCAAAGGAGCAA-AAAAUAUUUGUAAACAAAGCGGCUUCGUUUGGGAGCCGAAAGCGAAUUUGAG--CAA ....(((....(((((....))....((((((((((((..-......((((....))))...))))).))))))))))....)))........--... ( -27.70) >DroEre_CAF1 2716 97 - 1 GGAACGCAACAGGCGCGCAUGCAAAUUCCCAAAGGAGCAA-AAAAUAUUUGUAAACAAAGCGGCUUCGUUUGAGAGCCGAAAGCUAUUUUGAGCGCAA .....((.....))((((.((((((((((....)))....-.....)))))))..(((((..((((((..(....).)).))))..))))).)))).. ( -23.20) >DroYak_CAF1 2468 97 - 1 AGAACGCAACAGGCGCGCAUGCAAAUUCCCAAAGGAGCAA-AAAAUAUUUGUAAACAAAGCGGCUUCGUUUGCGAGCCGAAAGCUAACUUGAGCGCAA .....((.....))((((........(((....)))((..-......((((....)))).(((((.((....)))))))...))........)))).. ( -24.30) >consensus AGAACGCAACAGGCGCGCAUGCAAAUUCCCAAAGGAGCAA_AAAAUAUUUGUAAACAAAGCGGCUUCGUUUGAGAGCCGAAAGCGAAUUUGAGCGCAA .....((.....))((((...((((((((....)))((.........((((....)))).((((((.......))))))...))..))))).)))).. (-19.36 = -20.36 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:29 2006