Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,429,339 – 3,429,444 |
Length | 105 |
Max. P | 0.629796 |
Location | 3,429,339 – 3,429,444 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 80.32 |
Mean single sequence MFE | -30.82 |
Consensus MFE | -18.17 |
Energy contribution | -19.07 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.33 |
Mean z-score | -1.81 |
Structure conservation index | 0.59 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.629796 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3429339 105 - 22224390 AAUAUGCCAGCUGGCGAGGUGAUGAAUACACUCGAGGUGAUAUUCAAGAAUCUGCUAAAACGAAAGGCAAUCGACGGCACCGAAAAGCAGGGUCUCAAAAUCAAA .....(((....)))((..((((((((((((.....))).)))))).((..(((((....(....)........((....))...)))))..)))))...))... ( -27.10) >DroSec_CAF1 1677 105 - 1 AAUAUGCCAGCUGGCGAGGUGAUGAAUACACUCGAGGUGAUAUUCAAGAACCUGCUAAAGCGAAAGGCAAUCGCCGGCACCGAAAGGCAGGGCCUCAAAAUCCAG .....(((.(((((((((((..(((((((((.....))).))))))...)))((((.........)))).)))))))).((....))...)))............ ( -37.80) >DroSim_CAF1 589 105 - 1 AAUAUGCCAGCUGGCGAGGUGAUGAAUACACUCGAGGUGAUAUUCAAGAACCUGCUGAAGCGAAAGGCAAUCGCCGGCACCGAUAGGCAGGGCCUCAAAAUCCAG .....(((....)))(((((..(((((((((.....))).))))))....((((((....((...(((....))).....))...)))))))))))......... ( -36.60) >DroEre_CAF1 1699 105 - 1 CAUAUGCCAGCUGGCGAGGUGAUGAAUACACUCGAGGUGAUAUUCAAGGUCCUGCUGAAGCGCCAGGUCAUCGAAGGCAAUGAGAGGCAGGUGCUCAAAAUCCAG (((.((((..(((((.(((...(((((((((.....))).))))))....)))((....)))))))(((......))).......)))).)))............ ( -31.10) >DroYak_CAF1 1699 105 - 1 AAUAUGCCAGCUAGCGAGGUAAUGAAUACACUCGAGGUGAUAUUCAAGAACCUGCUCAAGCGAAAGGCCAUCGAAGCCAAUGAGAAGCAGGGGCUCAAAAUUCAG .....(((.((((((.((((..(((((((((.....))).))))))...)))))))..)))....)))....((.(((..((.....))..)))))......... ( -28.80) >DroAna_CAF1 2639 105 - 1 AAUGUGCAAGUAGGGGACGUGAUGAAUGUCCUGGAAGUGAUAUUCAAAAAUCUAAUCAAGCGGAAAUCUUUGGAUGGAGCCGAGAAGACCCCCGCCAAAAUCCGG .........(..((((......(((((((((.....).))))))))....(((..((...(((...(((......))).))).)))))))))..).......... ( -23.50) >consensus AAUAUGCCAGCUGGCGAGGUGAUGAAUACACUCGAGGUGAUAUUCAAGAACCUGCUAAAGCGAAAGGCAAUCGACGGCACCGAGAAGCAGGGCCUCAAAAUCCAG .....(((....)))(((((..(((((((((.....))).))))))....((((((....((....((........))..))...)))))))))))......... (-18.17 = -19.07 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:29 2006