| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 464,685 – 464,783 |
| Length | 98 |
| Max. P | 0.500000 |
| Location | 464,685 – 464,783 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 76.27 |
| Mean single sequence MFE | -24.55 |
| Consensus MFE | -9.02 |
| Energy contribution | -8.02 |
| Covariance contribution | -1.00 |
| Combinations/Pair | 1.36 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.37 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 464685 98 + 22224390 C-AUCGGAAGUGUCAGAAGAAGCGGAAUGUU-----AAGAAGUCAAAGUUAGAUUCUAAAUUAGCAUCCAACUAUCUUUGACAGGAAGCCAACUUUUCCGAAUA .-.((((((((((((((.((((.(((.((((-----((..((((.......)))).....)))))))))..)).)))))))))((...))....)))))))... ( -23.00) >DroVir_CAF1 113605 97 + 1 CAAUCGGAAAUGCUA--AGACGCCGACCUCAUCUCAAAGGGGUCGCUGAUCGA---AAAAUUAACAUUCAAUUUCA--UGACAGGAAGUCAACUUUCUCGAAUU ...((((((((....--.((((.(((((((........))))))).)).))((---(.........))).))))).--....((((((....)))))))))... ( -21.20) >DroGri_CAF1 101026 97 + 1 CAAUCGGAAAUGCUA--AGACGCCGACUUCUAUCCAUUGGGGUCGUUGAUCGA---AAAAUUAACAUUCAACCAUA--UGACAGGAAGUCAACUUUAUCGAAUC ...((((....((..--....)).(((((((...((((((....((((((...---...))))))......))).)--))...))))))).......))))... ( -19.10) >DroSec_CAF1 66839 98 + 1 C-AUCGGAAGUGUCAGAAGAAGCGGAAUGUU-----AAGGAGUCAAAGUUAGAUUCUAAAUUAGCAUCCAACUAUCUCUGACAGGAAGCUAACUUUUCCGAAUA .-.(((((((.((((((.((((.(((.((((-----((((((((.......))))))...)))))))))..)).))))))))((....))....)))))))... ( -29.40) >DroSim_CAF1 45878 98 + 1 C-AUCGGAAGUGUCAGAAGAAGCGGAAUGUU-----AAGGAGUCAAAGUUAGAUUCUAAAUUAGCAUCCAACCAUCUCUGACAGGAAGCGAACUUUUCCGAAUA .-.((((((((((((((.((.(.(((.((((-----((((((((.......))))))...)))))))))...).)))))))))(....).....)))))))... ( -28.90) >DroEre_CAF1 79447 98 + 1 C-AUCGGAAGUGUCAGAAGAAGCGGAAUGUU-----AAGCAGUCAAAGUUGGAGUCCAAAUUAGCAUCCAACUAUCUUUGACAGGAAGCCAACUUUUCCGAAUA .-.((((((((((((((.((....((.((..-----...)).))..(((((((((........)).))))))).)))))))))((...))....)))))))... ( -25.70) >consensus C_AUCGGAAGUGUCAGAAGAAGCGGAAUGUU_____AAGGAGUCAAAGUUAGAUUCUAAAUUAGCAUCCAACUAUCU_UGACAGGAAGCCAACUUUUCCGAAUA ...(((((((.((........))........................................((.(((..............))).)).....)))))))... ( -9.02 = -8.02 + -1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:39 2006