Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,395,444 – 3,395,545 |
Length | 101 |
Max. P | 0.768215 |
Location | 3,395,444 – 3,395,545 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 84.51 |
Mean single sequence MFE | -28.57 |
Consensus MFE | -22.13 |
Energy contribution | -22.35 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.11 |
Mean z-score | -2.35 |
Structure conservation index | 0.77 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.768215 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3395444 101 - 22224390 --CUUUGCCAUACGG-CUGGUAAAUAAUAAAUUUAUCAUUUGUCAGCAGUUAAAUGCCGACGCAGCCAACGUGCAGGGACUCCAAUUUCGAUUCCC-----CAUACCCA --...........((-(((((((((.....)))))))....(((.(((......))).)))..))))...(((..((((.((.......)).))))-----..)))... ( -24.80) >DroSec_CAF1 42014 91 - 1 --CUUUGCCGUACGG-CUGGUAAAUAAUAAAUUUAUCAUUUGUCAGCAGUUAAAUGCCGACGCAGCCGACGUGCAGGGACUCCAAUUCCGAUUC--------------- --(((((((((.(((-(((((((((.....)))))))....(((.(((......))).)))..)))))))).))))))................--------------- ( -30.40) >DroSim_CAF1 41902 91 - 1 --CUUUGCCGUACGG-CUGGUAAAUAAUAAAUUUAUCAUUUGUCAGCAGUUAAAUGCCGACGCAGCCGACGUGCAGGGACUCCAAUUCCGAUUC--------------- --(((((((((.(((-(((((((((.....)))))))....(((.(((......))).)))..)))))))).))))))................--------------- ( -30.40) >DroEre_CAF1 52968 106 - 1 --CCUUGCCGUAUGG-CUGGUAAAUAAUAAAUUUAUCAUUUGUCAGCAGUUAAAUGCCGACGCAGCCGACGUGCAGGGACUCCAAUUCCGUUUCCCAUUGCCAUUGCCA --(((((((((.(((-(((((((((.....)))))))....(((.(((......))).)))..)))))))).))))))............................... ( -31.10) >DroYak_CAF1 44481 88 - 1 --CUUUGCCGUAUGG-CUGGUAAAUAAUAAAUUUAUCAUUUGUCAGCAGUUAAAUGCCGACGCAGCCGACGUGCAGGGACUCCAAUUCCGA------------------ --(((((((((.(((-(((((((((.....)))))))....(((.(((......))).)))..)))))))).)))))).............------------------ ( -28.30) >DroAna_CAF1 79520 99 - 1 CCGUUUGCUGUUUGGACUGGUAAAUAAUAAAUUUAUCAUUUGUCAGCAGUUAAAUGCCGACGAAG-CGACGUGCAGGGACUCCGAUGCCGGCUACGAUUC--------- .(((..((((.(((((.((((((((.....))))))))((((((.(((......))).))))))(-(.....))......)))))...)))).)))....--------- ( -26.40) >consensus __CUUUGCCGUACGG_CUGGUAAAUAAUAAAUUUAUCAUUUGUCAGCAGUUAAAUGCCGACGCAGCCGACGUGCAGGGACUCCAAUUCCGAUUC_______________ ..(((((((((.(((.(((((((((.....)))))))....(((.(((......))).)))..)))))))).))))))............................... (-22.13 = -22.35 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:17 2006