Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,366,969 – 3,367,110 |
Length | 141 |
Max. P | 0.908036 |
Location | 3,366,969 – 3,367,087 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.78 |
Mean single sequence MFE | -44.05 |
Consensus MFE | -33.71 |
Energy contribution | -35.27 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.06 |
Mean z-score | -2.63 |
Structure conservation index | 0.77 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.834076 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3366969 118 + 22224390 GCCGAACAAACAAACUCUCUAAGCUAGCCGAUGCAAUUCGAAGCGAGCAGAGCGCAGGAAAACCGUUCGUCACAUCUGGCGCCCAACGUGGGCGUUAGCAUGGAAGAGCUUUUCCUGU-- ................((((..(((.(((((......)))..)).))))))).(((((((((..((((.((.((((((((((((.....))))))))).))))).)))))))))))))-- ( -43.70) >DroSec_CAF1 14326 120 + 1 GACGAACGAACAAACUGGCUGAGCUAGUCGUUGCAAUUCGAAGCGAGCAGAAGGCUGGAAAACAGUUCGUCACAGCUGGCGCCCAACGUGGGCGUUAGCAGAGCAGAGCCUUUCCUGCAA (((((((.......(..(((...((..(((((.........)))))..))..)))..)......)))))))...((((((((((.....))))))))))...((((........)))).. ( -49.22) >DroSim_CAF1 14300 119 + 1 GACGAACAAACAAACUGGCUGAGCUAGUCGUUGCAAUUCGAAGCGAGCAGAAGGCAGGAAAACAGUUUGUCACAGCUGGCGCCCAACGUGGGCGG-AGCAGAGCAGAGCCUUUCCUGCAA (((((((.......(((.((..(((..(((........)))....)))...)).))).......)))))))...(((..(((((.....))))).-)))...((((........)))).. ( -39.24) >consensus GACGAACAAACAAACUGGCUGAGCUAGUCGUUGCAAUUCGAAGCGAGCAGAAGGCAGGAAAACAGUUCGUCACAGCUGGCGCCCAACGUGGGCGUUAGCAGAGCAGAGCCUUUCCUGCAA ..............(((.((..(((..(((........)))))).)))))...((((((((...((((......((((((((((.....))))))))))......)))).)))))))).. (-33.71 = -35.27 + 1.56)
Location | 3,367,009 – 3,367,110 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 87.54 |
Mean single sequence MFE | -37.00 |
Consensus MFE | -31.01 |
Energy contribution | -32.57 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.08 |
Mean z-score | -2.55 |
Structure conservation index | 0.84 |
SVM decision value | 1.06 |
SVM RNA-class probability | 0.908036 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3367009 101 + 22224390 AAGCGAGCAGAGCGCAGGAAAACCGUUCGUCACAUCUGGCGCCCAACGUGGGCGUUAGCAUGGAAGAGCUUUUCCUGU------AGCAACAUGAGAAGGCCGACAAA ..(((.((...(((((((((((..((((.((.((((((((((((.....))))))))).))))).)))))))))))))------.))..(....)...)))).)... ( -38.90) >DroSec_CAF1 14366 107 + 1 AAGCGAGCAGAAGGCUGGAAAACAGUUCGUCACAGCUGGCGCCCAACGUGGGCGUUAGCAGAGCAGAGCCUUUCCUGCAACAUGAGCAACAUGAGAAGCCCGACAAA ..((..(((((((((((.....).((((......((((((((((.....)))))))))).))))..))))))..))))..((((.....))))....))........ ( -38.50) >DroSim_CAF1 14340 106 + 1 AAGCGAGCAGAAGGCAGGAAAACAGUUUGUCACAGCUGGCGCCCAACGUGGGCGG-AGCAGAGCAGAGCCUUUCCUGCAACAUGAGCAACAUGAGAAGCCCGACAAA ..(((.((.....((((((((....(((((....(((..(((((.....))))).-)))...)))))...))))))))..((((.....))))....)).)).)... ( -33.60) >consensus AAGCGAGCAGAAGGCAGGAAAACAGUUCGUCACAGCUGGCGCCCAACGUGGGCGUUAGCAGAGCAGAGCCUUUCCUGCAACAUGAGCAACAUGAGAAGCCCGACAAA ..((...((....((((((((...((((......((((((((((.....))))))))))......)))).))))))))....)).)).................... (-31.01 = -32.57 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:13 2006