Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,360,307 – 3,360,397 |
Length | 90 |
Max. P | 0.996697 |
Location | 3,360,307 – 3,360,397 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 74.15 |
Mean single sequence MFE | -18.55 |
Consensus MFE | -13.80 |
Energy contribution | -14.93 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.18 |
Mean z-score | -2.20 |
Structure conservation index | 0.74 |
SVM decision value | 2.73 |
SVM RNA-class probability | 0.996697 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3360307 90 - 22224390 AACGUUGGUAUGGC-GCAUUCAUUUCAAAGCAACUUUAGUAGU-----CGUUCUGUCUAUAUAAGAACAUAUGUAGGGAGAACCUAAGUUAGUAUA ....((((.((((.-....)))).))))....(((....(((.-----.(((((.((((((((......)))))))).))))))))....)))... ( -18.70) >DroSec_CAF1 6767 92 - 1 AACGCUGGUAUUACAGCAUUCAUUUCAAAACAAAUAUACUAGUUAAAUAGUUCUGCCUAUAUAAGUACAUAUAUAGGGAGAACUUAU--U--GAUA ...((((......))))........................(((((..((((((.((((((((......)))))))).))))))..)--)--))). ( -25.90) >DroSim_CAF1 6797 92 - 1 AACGCUUGUAUUACAGCAUUCAUUUCAAAACAAAUAUACUAGUUAAAUAGUUCUGCCUAUAUAAGUACAUAGAUAGGGAGAACCUAU--U--GAUA ...(((.(.....))))........................(((((...(((((.(((((.((......)).))))).)))))...)--)--))). ( -15.40) >DroYak_CAF1 6961 79 - 1 AACGUUCGUGCUAC-GCAUUCAUUUCGAUACAGCU----------AAUAGUACUGCCUAUAUAAAUAAAUAUAUAUGGAGAACUUAC--U----AA ...((((((((((.-((..((.....))....)).----------..))))))...(((((((........))))))).))))....--.----.. ( -14.20) >consensus AACGCUGGUAUUAC_GCAUUCAUUUCAAAACAAAUAUACUAGU__AAUAGUUCUGCCUAUAUAAGUACAUAUAUAGGGAGAACCUAU__U__GAUA ...((((......))))................................(((((.((((((((......)))))))).)))))............. (-13.80 = -14.93 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:07 2006