Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,347,996 – 3,348,116 |
Length | 120 |
Max. P | 0.661566 |
Location | 3,347,996 – 3,348,116 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.28 |
Mean single sequence MFE | -41.85 |
Consensus MFE | -22.04 |
Energy contribution | -20.52 |
Covariance contribution | -1.52 |
Combinations/Pair | 1.50 |
Mean z-score | -1.92 |
Structure conservation index | 0.53 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.661566 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3347996 120 + 22224390 AUCUUGCGCUCCAGAAGGACAUUCUUUAGUCCUGUCUUCUGCUGCAGCUCGACGAUCACGUCGUUGAAACGCUCCUUCAGGCCCUCCCGUUCUGCCACCAGCGAGUCGUUGCGCAGGAUC (((((((((..(((((((((........)))))....))))..)).((((((((((...))))))))(((((((((...(((...........)))...)).))).))))))))))))). ( -41.20) >DroVir_CAF1 3408 120 + 1 AUCUUGCGCUCGAGCAGGACAUUCUUGAGGCCAGUCUUCUGCUGCAAUUCAACGAUGACCUCGUUGAAUCGAGCCUUUAGAUUGGCUCGCUCGCCAACGAGAGCAUCGUUGCGCAGCAAA .((((((......)))))).......((((.....))))((((((....((((((((..(((((((...((((((........)))))).....)))))))..)))))))).)))))).. ( -51.30) >DroGri_CAF1 4791 120 + 1 AUCUUGCGCUCGAGCAGCACAUUCUUGAGUCCCGUCUUUUGUUGCAAUUCAACGAUGACCUCGUUGAAGCGUGUCUUGAGUGUGGCACGCUCGCCAACGAGGGCAUCGUUGCGUAAUAGC ...((((((....((((((......((.....)).....)))))).....(((((((.((((((((.((((((((........))))))))...)))))))).))))))))))))).... ( -48.90) >DroWil_CAF1 7888 120 + 1 AUCUUGCGCUCGAGCAAAACAUUCUUGAGUCCCGUCUUUUGCUGCAACUCAACGAUCACCUCAUUGAAGCGCUCCUUGAGUCCUUCGCGUUCGCUGACCAGAGCAUCGUUGCGCAAUAUG ...((((((.(((((.......((((((((..((.(....).))..)))))).))..........((((.((((...)))).))))))((((........)))).)))..)))))).... ( -32.10) >DroMoj_CAF1 5098 120 + 1 AUCUUGCGCUCGAGCAGCACGUUCUUCAGGCCCGUCUUCUGUUGUAGCUCGACGAUGACCUCGUUGAAGCGCGCCUUCAGAUUGGCCCGCUCGCUGACCAGAGCAUCGUUGCGCAGCAGC ...((((((.(((((((.(((..(.....)..)))))((((...(((((((((((.....)))))))((((.(((........))).)))).))))..)))))).)))..)))))).... ( -42.20) >DroAna_CAF1 16172 120 + 1 AUCUUCCUCUCCAGGAGGACGUUCUUGAGACCGGUCUUCUGCUGCAGCUCCACGAUGACGUCGUUGAAGCGCUCCUUGAGGCCCUCCCUCUCGGACACCAGGGAAUCGUUGCGAAGUAUA ..((((.....((((((..((.((....)).))..))))))..(((((((.(((((...))))).)).....((((((..(.((........)).)..))))))...))))))))).... ( -35.40) >consensus AUCUUGCGCUCGAGCAGGACAUUCUUGAGUCCCGUCUUCUGCUGCAACUCAACGAUGACCUCGUUGAAGCGCGCCUUGAGACCGGCCCGCUCGCCAACCAGAGCAUCGUUGCGCAGUAUC ...((((......)))).....................((((.((((((((((((.....))))))).....................((((........))))...))))))))).... (-22.04 = -20.52 + -1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:05 2006