Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,347,207 – 3,347,325 |
Length | 118 |
Max. P | 0.990153 |
Location | 3,347,207 – 3,347,325 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.17 |
Mean single sequence MFE | -28.62 |
Consensus MFE | -24.08 |
Energy contribution | -24.56 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.15 |
Mean z-score | -2.54 |
Structure conservation index | 0.84 |
SVM decision value | 2.20 |
SVM RNA-class probability | 0.990153 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3347207 118 - 22224390 CAAUGAAAAAUCC--CACCUUGGUAGGCGCAGAAAAUGUAAAUUGUUAGUGCUGCUUGGUUUCUUUAAGAAUUUAUUCAUUCUGUGCCUAUCUGGAGUGUAUUAUGUAAACUCCCCCGCC .............--......(((((((((((((...(((((((.((((.(((....)))....)))).)))))))...))))))))))))).(((((...........)))))...... ( -34.60) >DroSec_CAF1 2849 107 - 1 CAAUGAAAAAUCC--CACCUUGGUAGUCACAGAAAAUGUAAAUUGUUAGUGCUGCUUGGAUUCUUUAAGAAUUUAUUCAUUCUGUGCCUACCUGGAGUGUAUUAUGUA-A---------- .............--(((((.(((((.(((((((...(((((((.((((..((....)).....)))).)))))))...))))))).))))).)).))).........-.---------- ( -27.60) >DroSim_CAF1 2878 108 - 1 CAAUGAAAAAUCC--CACCUUGGUAGUCACAGAAAAUGUAAAUUGUUAGUGCUGCUUGGAUUCUUUAAGAAUUUAUUCAUUCUGUGCCUACCUGAAGUGUAUUAUGUAAA---------- .............--(((...(((((.(((((((...(((((((.((((..((....)).....)))).)))))))...))))))).)))))....)))...........---------- ( -25.10) >DroEre_CAF1 5953 111 - 1 CAAUAAAUAAUCC--CGCCUUUGUAGGCACAGAAAACGUAAAUUGGUAGUGGUGUUUAG-AACUUUAAGAAUUUAUUCAUUCUGUGCUUACCUGAAGUGUAUUACAUAAAAUCU------ .............--.((((((((((((((((((...(((((((..(((.(((......-.))))))..)))))))...))))))))))))..)))).))..............------ ( -25.50) >DroYak_CAF1 2967 113 - 1 CAAUUAAGAAUCCCUCGCCUUUGUAGGCACAGAAAAUGUAAAUUGCUAGUGCUCUUGAG-AACUUUAAGAAUUUAUUCAUUCUGUGCCUACCAGAAGUGUAUUAUUUGAGUUCU------ .......((((....(((.(((((((((((((((...(((((((((....)).((((((-...)))))))))))))...))))))))))).)))).)))....)))).......------ ( -30.30) >consensus CAAUGAAAAAUCC__CACCUUGGUAGGCACAGAAAAUGUAAAUUGUUAGUGCUGCUUGG_UUCUUUAAGAAUUUAUUCAUUCUGUGCCUACCUGAAGUGUAUUAUGUAAA_UC_______ ...............(((...(((((((((((((...(((((((.((((...............)))).)))))))...)))))))))))))....)))..................... (-24.08 = -24.56 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:04 2006