Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,341,986 – 3,342,097 |
Length | 111 |
Max. P | 0.581126 |
Location | 3,341,986 – 3,342,097 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.34 |
Mean single sequence MFE | -39.42 |
Consensus MFE | -16.69 |
Energy contribution | -17.65 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.36 |
Mean z-score | -1.80 |
Structure conservation index | 0.42 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.581126 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3341986 111 + 22224390 AAUCGCUGCCAUGAAAAAGGGCAAGGGAUCAAGCUCCCUUGGAUCGAAGGAAUC---AUCGGGGAGACCAUCCACGGCAG------UCCUGGUGUUCAAGAAGUGCGCUAGAUUUGCGGA ......((((.........))))..((((....(((((((((.((....)).))---)..))))))...)))).(.((((------..(((((((.(.....).)))))))..)))).). ( -37.40) >DroSec_CAF1 19514 111 + 1 AAUCGCUACCAUGAAAAAGGGUAAGGGAUCAAGAUCCCUUGGAUCGAAGGAAUC---AUCUGGGAGACCAUCCUCGUCAG------UCCUGGUGUCCAAGGAGUGCGCGAGACUUGCGGA ..((((....((((.......((((((((....))))))))..((....)).))---)).(((....)))..(((((((.------((((((...)).)))).)).)))))....)))). ( -37.40) >DroSim_CAF1 21357 111 + 1 AAUCGCUACCAUGAAAAAGGGCAAGGGAUCAAGCUCCCUUGGAUCGAAGGAAUC---AUCUGGGAGACCAUCCUCGUCAG------UCCUGGUGUCCAAGGAGUGCGCGAGACUUGCGGA ........((.(....).))(((((((((....(((((.(((.((....)).))---)...)))))...))))((((((.------((((((...)).)))).)).))))..)))))... ( -37.90) >DroEre_CAF1 20329 111 + 1 AAUCGCUGCCAUGAAAAAGACCAAGAGUGCAAGCUCCUUGGGAUCAAACGGAUC---ACCCCAGGGACAACCUUCGGAAUCCGCCG------GAUUGACGGAGUCCGCCGGAUUGGCGGA .....(((((..........((((((((....))).)))))((((.....))))---..((.((((....)))).))((((((.((------((((.....)))))).))))))))))). ( -40.40) >DroYak_CAF1 20010 117 + 1 AAUCGCUACCAUGAAAAAGACCAAGGGAUCAAGCUCCCUUGGAACGAAGGGAUCAUCAUCCCGGAGACUAUCUUCU---UCGGCUGUGGUGGUGUCCAAGGAGUCUGGGGGAUCUGCGGA ...(((((((((........((((((((......))))))))..(((((((((....)))))((((.....)))))---)))...)))))))))(((..(((..(....)..)))..))) ( -44.00) >consensus AAUCGCUACCAUGAAAAAGGGCAAGGGAUCAAGCUCCCUUGGAUCGAAGGAAUC___AUCCGGGAGACCAUCCUCGGCAG______UCCUGGUGUCCAAGGAGUGCGCGAGAUUUGCGGA ...((((.((...........(((((((......))))))).....................(((.((((...................)))).)))..))))))(((((...))))).. (-16.69 = -17.65 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:03 2006