Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,341,518 – 3,341,608 |
Length | 90 |
Max. P | 0.973055 |
Location | 3,341,518 – 3,341,608 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 77.64 |
Mean single sequence MFE | -22.64 |
Consensus MFE | -8.68 |
Energy contribution | -10.28 |
Covariance contribution | 1.60 |
Combinations/Pair | 1.11 |
Mean z-score | -2.48 |
Structure conservation index | 0.38 |
SVM decision value | 1.70 |
SVM RNA-class probability | 0.973055 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3341518 90 - 22224390 UUUUCCACUAUUCGGUU--GAUAUCGAUAUACACAUCGUCGCGUCGAUGAUAUUUUUUCCGGCGCACAGUCACACUGAACAGCUGUUU--U-UUU .....((((.(((((((--(((..((((......))))..((((((..((.....))..))))))...)))).)))))).)).))...--.-... ( -21.20) >DroSec_CAF1 19067 90 - 1 UUUUCGAUUAAUCAGGU--GAUAUCGAUAUAU-CACCGUCGCGCCGGUGAUAUUU-UUCCGGCGCACAGUCACACUAAACAGCUGUUUUUU-UUU .....((((.....(((--(((((....))))-))))((.(((((((.((....)-).)))))))))))))....................-... ( -28.50) >DroSim_CAF1 20900 88 - 1 UUUUCGACUAAUCAGGU--GAUAUCGAUAUAU-CACCGUCGCGCCGGUGAUAUUU-UUCCGGCGCACAGUCACACUAAACAGCUGUUU--U-UUU .....((((.....(((--(((((....))))-))))((.(((((((.((....)-).))))))))))))).................--.-... ( -30.80) >DroEre_CAF1 19542 73 - 1 CUUGCCACCAUUCGGGCAAAAUAUCGAUAUAU-CGCCAU------------------UCCGGCGCACAGUCACACUGAACAGCUGUUU--U-UUU .(((((........)))))......(((....-((((..------------------...))))....))).....((((....))))--.-... ( -14.10) >DroYak_CAF1 19561 89 - 1 CUUUAAACUUUUCGGGG--GCUAUCGAUAUAA-CACCAUCGCGUCGAUGACAUUU-UUGCGGCGCACAGUCACACUGAACAGCUGUUU--UUUUU .......((.(((((.(--(((...(((....-....)))((((((.........-...))))))..))))...))))).))......--..... ( -18.60) >consensus UUUUCCACUAUUCGGGU__GAUAUCGAUAUAU_CACCGUCGCGCCGAUGAUAUUU_UUCCGGCGCACAGUCACACUGAACAGCUGUUU__U_UUU ..............(((...((((....))))..)))...((((((.............))))))(((((...........)))))......... ( -8.68 = -10.28 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:02 2006