Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,336,548 – 3,336,641 |
Length | 93 |
Max. P | 0.735603 |
Location | 3,336,548 – 3,336,641 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 78.88 |
Mean single sequence MFE | -22.65 |
Consensus MFE | -14.94 |
Energy contribution | -14.22 |
Covariance contribution | -0.72 |
Combinations/Pair | 1.25 |
Mean z-score | -1.50 |
Structure conservation index | 0.66 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.735603 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3336548 93 + 22224390 ---------ACGUUGGCCUAUUUGGCUAUGAAACAUACCCGAUGGUGGCCAGCAAGAACAUAAUCUUGCUGUCCCAACUCUCUCGCUCCUCGCCCUCCUUCU ---------..(((((((...((((.((((...)))).)))).)))((.((((((((......)))))))).))))))......((.....))......... ( -25.80) >DroPse_CAF1 22141 93 + 1 ACGGUUUCAACG------A--GUAGUUG-UUUACUCACCCGAUGGUGGCCAGCAGGAACAUGAUUUUGCUGUCCCAACUCUCGCGCUCUUCGCCCUCCUUCU ..((.......(------(--(.(((((-.....(((((....))))).((((((((......))))))))...))))))))(((.....)))))....... ( -23.90) >DroSec_CAF1 14139 85 + 1 ---------ACG------U--AUGGCUAUGAAACAUACCCAAUGGUGGCCAGCAGGAACAUGAUCUUGCUGUCCCAACUCUCCCGCUCCUCGCCCUCCUUCU ---------..(------(--(((.........)))))....(((.(((.(((((((......)))))))))))))........((.....))......... ( -19.50) >DroSim_CAF1 15964 90 + 1 ---------ACGUUG-CCU--AUAGCUAUGAAACAUACCCAAUGGUGGCCAGCACGAACAUGAUCUUGCUGUCCCAACUCUCCCGCUCCUCGCCCUCCUUCU ---------..((((-...--...(((((............)))))((.(((((.((......)).))))).))))))......((.....))......... ( -14.60) >DroEre_CAF1 14596 90 + 1 ---------GCUAUG-GCU--AUGGCUAUGGCACAUACCCAAUGGUGGCCAGCAAGAACAUGAUUUUGCUGUCCCAGCUCUCCCGCUCCUCGCCCUCCUUCU ---------((((((-((.--...))))))))...........((.(((((((((((......))))))))....(((......)))....)))..)).... ( -28.20) >DroPer_CAF1 22649 93 + 1 ACGGUUUCAACG------A--GUAGUUG-UUUACUCACCCGAUGGUGGCCAGCAGGAACAUGAUUUUGCUGUCCCAACUCUCGCGCUCUUCGCCCUCCUUCU ..((.......(------(--(.(((((-.....(((((....))))).((((((((......))))))))...))))))))(((.....)))))....... ( -23.90) >consensus _________ACG______U__AUAGCUAUGAAACAUACCCAAUGGUGGCCAGCAGGAACAUGAUCUUGCUGUCCCAACUCUCCCGCUCCUCGCCCUCCUUCU .......................(((..........(((....)))((.((((((((......)))))))).))..........)))............... (-14.94 = -14.22 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:01 2006