Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,335,405 – 3,335,509 |
Length | 104 |
Max. P | 0.556695 |
Location | 3,335,405 – 3,335,509 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 76.76 |
Mean single sequence MFE | -29.74 |
Consensus MFE | -19.38 |
Energy contribution | -18.68 |
Covariance contribution | -0.69 |
Combinations/Pair | 1.43 |
Mean z-score | -1.18 |
Structure conservation index | 0.65 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.556695 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3335405 104 - 22224390 AUAUAUAUA-UUUAC-CAU-UUCAGAGUGCUUCCGGAACAGGUCUGGCCUUCAUCAUCUUCACGGAGGCGAUCAAUCAGUUUCCGGGUGCACAACUCUGGGCUGUCC .........-.....-((.-((((((((((.((((((((.(((.(.((((((...........)))))).)...))).).))))))).))...)))))))).))... ( -30.20) >DroPse_CAF1 20253 104 - 1 UGUUUUGUU-UUUUU-CUU-UGCAGAGUGCCUCUGGCACUGGUCUGGCUUUCAUUAUAUUCACGGAGGCGAUCAAUCAGUUUCCAGGCGCACAGCUCUGGGCCGUUC .........-.....-...-..((((((((.(((((.((((((.(.((((((...........)))))).)...))))))..))))).))...))))))........ ( -27.30) >DroEre_CAF1 13455 104 - 1 ACUAUUAUU-AUUAC-UAU-UUCAGAGUGCUUCAGGAACAGGAUUGGCCUUCAUCAUCUUCACGGAGGCAAUCAAUCAGUUUCCGGGCGCUCAACUCUGGGCCGUCC .........-.....-...-....(((((((...((((...(((((((((((...........))))))...)))))...)))).)))))))............... ( -28.30) >DroWil_CAF1 222082 99 - 1 AUU----CC-AUUUC-CA--UUUAGAGUGCCUCGGGCACAGGACUGGCUUUCAUUAUCUUCACCGAGGCCAUCAAUCAAUUUCCUGGAGCCCAACUCUGGGCCGUUC ...----..-...((-((--......(((((...)))))..((.(((((((.............)))))))))...........))))(((((....)))))..... ( -26.62) >DroMoj_CAF1 29215 105 - 1 AAUUGUGUC-CUUCCCUUU-GGCAGAGCGCAUCUGGAACAGGGCUGGCUUUUAUCAUCUUUACUGAGGCGAUCAAUCAGUUUCCUGGCGCCCAGCUCUGGGCUGUGC ...((((..-((.((....-)).))..))))...((..((((((((((....(((..(((....)))..)))...((((....)))).).)))))))))..)).... ( -31.30) >DroAna_CAF1 18667 106 - 1 AUUUAUGGCUUUUGC-UUUCCACAGAGCGCCUCGGGCACUGGCCUGGCUUUUAUUAUCUUCACGGAGGCCAUUAAUCAGUUUCCCGGCGCCCAGCUCUGGGCUGUCC ....(((((((((((-((......))))(((..((((....)))))))...............))))))))).............((((((((....))))).))). ( -34.70) >consensus AUUUAUGUC_UUUAC_CAU_UUCAGAGUGCCUCGGGAACAGGACUGGCUUUCAUCAUCUUCACGGAGGCGAUCAAUCAGUUUCCGGGCGCCCAACUCUGGGCCGUCC ......................((((((((..((((.....(..((((((((...........))))))...))..).....))))..))...))))))........ (-19.38 = -18.68 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:59 2006