Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,331,736 – 3,331,831 |
Length | 95 |
Max. P | 0.762272 |
Location | 3,331,736 – 3,331,831 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 71.81 |
Mean single sequence MFE | -25.92 |
Consensus MFE | -11.63 |
Energy contribution | -12.27 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.16 |
Mean z-score | -1.82 |
Structure conservation index | 0.45 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.762272 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3331736 95 - 22224390 AGC-CGGAGCGACGAAGUCGCUU-GAUGGAAAGUUGUUGUUUAUGCUUAAGU---UGUACAUAUGUACAUAUUUCUAAGGCGGAAAUUUCUGGGCGACAA---- ..(-(((((((((...)))))))-..)))....(((((((((..((((.((.---(((((....))))).....)).))))(((....))))))))))))---- ( -25.80) >DroSec_CAF1 9418 88 - 1 AGCUCGGAGCGACGGAGUCGCUU-CGUGGAAAGUUGUUGCUUAUGCUUAAAU---UGUG--------CAUAUUUCUUAGGCGGAAAUUUCUUGGCGACAA---- ..(.(((((((((...)))))))-)).).....(((((((((((((......---...)--------))))(((((.....)))))......))))))))---- ( -27.10) >DroSim_CAF1 11226 87 - 1 AGC-CGGAGCGACGGAGUCGCUU-CGUGGAAAGUUGUUGCUUAUGCUUAAAU---UGUG--------CAUAUUUCUUAGGCGGAAAUUUCUUGGCGACAA---- .((-(((((((((...)))))))-)..(((((....((((((((((......---...)--------)))).......)))))...))))).))).....---- ( -26.81) >DroEre_CAF1 9755 95 - 1 AGC------CAACGGAGCCGCUG-GCAGGAAAGUUGUUAUUUGUGUGUACGACUACAUACAUAUUUAUGUAUUUUUUAGGCGGAAAUUUCUUGGCGACAU--CA .((------(((..((.(((((.-...(((((((...((..((((((((....))))))))....))...))))))).)))))...))..))))).....--.. ( -27.40) >DroYak_CAF1 9802 84 - 1 AGC------CAACUGAGCCGCUCUGAAGGAAAGUUGUUGUUUGUGUUU------AUAUACAU--------AUUUUUUAGGCGGAAAUUUCUUGGCGACAUCUCA .((------(((..((.((((.((((((((...........(((((..------....))))--------)))))))))))))...))..)))))......... ( -22.50) >consensus AGC_CGGAGCGACGGAGUCGCUU_GAUGGAAAGUUGUUGUUUAUGCUUAAAU___UGUACAU_____CAUAUUUCUUAGGCGGAAAUUUCUUGGCGACAA____ ................((((((....((((((....(((((((.................................)))))))...))))))))))))...... (-11.63 = -12.27 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:58 2006