Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,324,226 – 3,324,319 |
Length | 93 |
Max. P | 0.559940 |
Location | 3,324,226 – 3,324,319 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 83.57 |
Mean single sequence MFE | -23.27 |
Consensus MFE | -19.16 |
Energy contribution | -19.97 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.04 |
Mean z-score | -1.46 |
Structure conservation index | 0.82 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.559940 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3324226 93 - 22224390 UUUACAUUACAAUUAGAUUGAAUGGCCAGAUUUUGAAGUGAUUUGGCCUGCGGUUCACAGCCUCAUUCAUAUUCAUUCCCAUUCCGUUGGGU-------------A ...............((.((((((((((((((.......))))))))).(.(((.....))).))))))...))...((((......)))).-------------. ( -24.10) >DroSec_CAF1 2071 105 - 1 UUUACUUUUCCAUUAGAUUGAAUGGCCAGAUUUUGAAGUGAUUUGGCCUGCGGUUCACAGCCUCAUUCAUAUUCAUUCCCAUUCCGCUGGGUAUCGCUUGCC-GUA ..(((..........((.((((((((((((((.......)))))))))((.(((.....))).)).....))))).))...........((((.....))))-))) ( -24.20) >DroSim_CAF1 2072 105 - 1 UUUACUUUUCCAUUAGAUUGAAUGGCCAGAUUUUGAAGUGAUUUGGCCUGCGGUUCACAGCCUCAUUCAUAUUCAUUCCCAUUCCGCUGGGUAUCGCUUGCC-GUA ..(((..........((.((((((((((((((.......)))))))))((.(((.....))).)).....))))).))...........((((.....))))-))) ( -24.20) >DroYak_CAF1 2132 96 - 1 UUUAUUCUUCCAUUACAUUGAAUGGCCAGAUUUUGAAGUGAUUUGGCCUGCGGUUCACAGCCUCAUUCAUAUUCGUGCGCA----------UAUCUCUUGCUUUUA ..........(((.....((((((((((((((.......))))))))).(.(((.....))).)))))).....))).(((----------.......)))..... ( -20.60) >consensus UUUACUUUUCCAUUAGAUUGAAUGGCCAGAUUUUGAAGUGAUUUGGCCUGCGGUUCACAGCCUCAUUCAUAUUCAUUCCCAUUCCGCUGGGUAUCGCUUGCC_GUA ..................((((((((((((((.......)))))))))((.(((.....))).)).....)))))..((((......))))............... (-19.16 = -19.97 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:57 2006