Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,317,515 – 3,317,634 |
Length | 119 |
Max. P | 0.725792 |
Location | 3,317,515 – 3,317,634 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 74.96 |
Mean single sequence MFE | -34.18 |
Consensus MFE | -14.79 |
Energy contribution | -15.85 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.38 |
Mean z-score | -2.03 |
Structure conservation index | 0.43 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.725792 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3317515 119 + 22224390 AGAAAUUUUCGCAAAAUAUCGAGUCAGUUUUUGCAAAUGCCAGUGCAAAAAAUCGAUAUGGCCGUUUUAAUACGCAUCUACGAAUGGAUGCUGAACGAGGAGAAAACCUUUGUCGUUGG ..........((...(((((((.....((((((((........)))))))).))))))).))...........(((((((....)))))))..(((((.(((......))).))))).. ( -30.70) >DroSec_CAF1 32149 119 + 1 AGAAAUUUUCGCAAAUUGUCGAGUCCAUUUUUGCAAAUACCAGUGCAAAAAAUCGAAAUGGCCAUUUUAGCCCGCAUCUACGAAUGGAUGCUGGACGAGGAAGAAAGCUUUCUCGUUAA ........((((.....).)))(((((((((((((........))))))))........(((.......))).(((((((....))))))))))))(((((((....)))))))..... ( -33.40) >DroSim_CAF1 763 119 + 1 AGAAAUUUUCGCAAAUUGUCGAGUCCAUUUUUGCAAAUACCAGUGCAAAGAAUCGAAAUGGCCAUUUUAGCCCGCAUCUACGAAUGGAUGCUGGACGAGGAAGAAAGCUUCCUCGUUAA ........((((.....).)))(((((((((((((........))))))))........(((.......))).(((((((....))))))))))))(((((((....)))))))..... ( -36.40) >DroEre_CAF1 24965 119 + 1 CGCAAUUUCCGCGACUUUUCGAGUCCCUUCUUGCAAAUGCCAGUGCAAAAAGUCCAAAUGGCCCUGGUAGUUCGCAUCUACGAAUGGAUGCUGGAGGAGCAGAAAAGCUUCUCCAUUGG .((((.....(.(((((...))))))....))))...((((((.((..............)).))))))....(((((((....)))))))(((((((((......))))))))).... ( -37.74) >DroYak_CAF1 23487 119 + 1 CGCAAUUUUCGCGAUUUUUCGAGCCAAUUUUUGCAAAUGCCAGUGCAAAAAGUCGAAAUGGCCCUUAUAGUUCGCAUCUACGAAUGGAUGCUGAACGAGGAGGAAAACUUUGCCAUUGG (((.......))).....((((.....((((((((........)))))))).))))((((((((((...(((((((((((....))))))).))))...))))........)))))).. ( -35.30) >DroAna_CAF1 112 119 + 1 ACCAAUUUUCGCGAUAUGCGUGGCAGUUUUUUGCAAUUUCCAGUCUGUAAAAUCGGUAUGGAAUUGGUGAUGGAACUCUACGAUUGGAUGGUAACCGACAACAAGACCAUCGAUAUCAA ............(((((.(((((.(((((((..(...(((((..(((......)))..)))))...)..).)))))))))))....((((((.............)))))).))))).. ( -31.52) >consensus AGAAAUUUUCGCAAAUUGUCGAGUCCAUUUUUGCAAAUGCCAGUGCAAAAAAUCGAAAUGGCCAUUUUAGUCCGCAUCUACGAAUGGAUGCUGAACGAGGAGAAAAGCUUCGUCAUUAA .....((((((.....((((((.....((((((((........)))))))).))))))............((.(((((((....))))))).)).)))))).................. (-14.79 = -15.85 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:56 2006