Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,294,426 – 3,294,518 |
Length | 92 |
Max. P | 0.956736 |
Location | 3,294,426 – 3,294,518 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 67.55 |
Mean single sequence MFE | -30.26 |
Consensus MFE | -15.45 |
Energy contribution | -14.80 |
Covariance contribution | -0.65 |
Combinations/Pair | 1.33 |
Mean z-score | -2.03 |
Structure conservation index | 0.51 |
SVM decision value | 1.47 |
SVM RNA-class probability | 0.956736 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3294426 92 - 22224390 GUAUGUUGUAUAUGAAUCACGGAUCGCUUAGAUCUGGAAACUUGUCCGGGCCACU-------------UGGCCAUAAAUCAGGCGGGGCGACAAUCGUGUACAAA .....((((((((((.((.((((((.....))))))))...((((((.((((...-------------.))))......(....)))))))...)))))))))). ( -31.50) >DroVir_CAF1 144636 99 - 1 GUAGAG-AGAUAUGAAUCGCAGCUAGGCUAA--CCCAAAACUUGUC-GCGCUAUUGAAGUAAGUGUUCGGGCCAUAAAUCAGCCGAGCCGGCGAUCGUGUCUU-- .....(-((((((((.((((.(((.((((..--.......((((..-(((((.........))))).)))).........)))).)))..)))))))))))))-- ( -30.57) >DroSim_CAF1 40241 91 - 1 GUAUGUUGUAUAUGAAUCACGGAUCGCUUAGAUCUGGAAACUUGUGCGGGGCAUU-------------U-GCCAUAAAUCAGGCGGGGCGACAAUCGUGUACAAA .....((((((((((.((.((((((.....)))))))).........(..((.((-------------(-(((........))))))))..)..)))))))))). ( -28.70) >consensus GUAUGUUGUAUAUGAAUCACGGAUCGCUUAGAUCUGGAAACUUGUCCGGGCCAUU_____________UGGCCAUAAAUCAGGCGGGGCGACAAUCGUGUACAAA .....((((((((((......(.((((((.(..(((..........)))..)..................(((........))).)))))))..)))))))))). (-15.45 = -14.80 + -0.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:55 2006