Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 462,543 – 462,662 |
Length | 119 |
Max. P | 0.500000 |
Location | 462,543 – 462,662 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.52 |
Mean single sequence MFE | -32.80 |
Consensus MFE | -23.35 |
Energy contribution | -22.25 |
Covariance contribution | -1.10 |
Combinations/Pair | 1.20 |
Mean z-score | -1.20 |
Structure conservation index | 0.71 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 462543 119 - 22224390 CUGCGGUACCCGCACUUCGAUACAAAACGUAAAUUGGUAAUGUUGCUAUG-UUGAAAAAGAGUUGAGGUCGCCAUUAUGGGGGGUCUUAUCUCUUUUCUACCGGAUCAUGAGUUUGUUCA .(((((...)))))....((.(((((.(((.(.((((((......(....-..).(((((((.((((..(.((......)).)..)))).))))))).)))))).).)))..))))))). ( -30.30) >DroSec_CAF1 64704 99 - 1 CUGCGGUACCCGCACUUCGAUA-----------AUGGCAAUGUUCCUAGACUCGGAAGAGUCUUCAGGUCGCCAAUGUGGGAGGGU----------UCUACCGGAUCAUAAGUUCGUUCU .(((((...)))))((((.(((-----------.((((......(((((((((....))))))..)))..)))).))).))))(((----------((....)))))............. ( -34.80) >DroSim_CAF1 43742 99 - 1 CUGCGGUACCCGCACUUCGAUA-----------AUGGUAAUGUUCCUAGACUCGGAAGAGUCUUCAGGUCGCCACUGUGGGAGGGC----------UCUACCGGAUCAUAAGUUCGUUCU ...(((((...((.((((.(((-----------.((((......(((((((((....))))))..)))..)))).))).)))).))----------..)))))................. ( -33.30) >consensus CUGCGGUACCCGCACUUCGAUA___________AUGGUAAUGUUCCUAGACUCGGAAGAGUCUUCAGGUCGCCAAUGUGGGAGGGC__________UCUACCGGAUCAUAAGUUCGUUCU .(((((...)))))((((.(((............((((.((.(....((((((....))))))..).)).)))).))).))))..................(((((.....))))).... (-23.35 = -22.25 + -1.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:36 2006