| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,283,588 – 3,283,707 |
| Length | 119 |
| Max. P | 0.812367 |
| Location | 3,283,588 – 3,283,707 |
|---|---|
| Length | 119 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.85 |
| Mean single sequence MFE | -30.15 |
| Consensus MFE | -24.40 |
| Energy contribution | -24.40 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.812367 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3283588 119 + 22224390 AAUAUAUGUAUAUAUAUAUAGGUUCUACCGAGAUUUGAACUCGGAUCGCUGGAUUCAAAGUCCAGAGUGCUAACCGUUACACCAUAGAACCGGAUAAAUGCGCUGC-UGCAAAAUUCCAG ..(((((((....)))))))((((((((((((.......)))))....((((((.....))))))...................)))))))(((....((((....-))))....))).. ( -33.30) >DroVir_CAF1 126854 108 + 1 ----AAGGU-------UCAAGGUUCUACCGAGAUUUGAACUCGGAUCGCUGGAUUCAAAGUCCAGAGUGCUAACCAUUACACCAUAGAACCAGCUGUUAGCUUCGCGUCCAAAACU-CAG ----..(((-------(((((.(((....))).)))))))).(((.((((((((.....)))))(((.((((((.....................)))))))))))))))......-... ( -28.20) >DroSim_CAF1 28952 112 + 1 AAUCCACUU-------GGUAGGUUCUACCGAGAUUUGAACUCGGAUCGCUGGAUUCAAAGUCCAGAGUGCUAACCGUUACACCAUAGAACCGGAUAAAUGCGCUGU-UGCAAAAUUCCAG ...((....-------))..((((((((((((.......)))))....((((((.....))))))...................)))))))(((....((((....-))))....))).. ( -30.80) >DroEre_CAF1 55617 105 + 1 -------UG-------AAUAGGUUCUACCGAGAUUUGAACUCGGAUCGCUGGAUUCAAAGUCCAGAGUGCUAACCAUUACACCAUAGAACCGGAUAAAUGCGCUGC-UGCAAAAUUCCAG -------..-------....((((((((((((.......)))))....((((((.....))))))...................)))))))(((....((((....-))))....))).. ( -30.60) >DroYak_CAF1 55350 112 + 1 AUCCGACGG-------ACCAGGUUCUACCGAGAUUUGAACUCGGAUCGCUGGAUUCAAAGUCCAGAGUGCUAACCAUUACACCAUAGAACCGGAUAAAAGCGCUGC-UGUAAAAUUCCAG .......((-------(((.((((((((((((.......)))))....((((((.....))))))...................))))))))).....(((...))-).......))).. ( -29.60) >DroMoj_CAF1 137484 112 + 1 AAAACACGC-------UGAAGGUUCUACCGAGAUUUGAACUCGGAUCGCUGGAUUCAAAGUCCAGAGUGCUAACCAUUACACCAUAGAACCAGUCGAGUACCAAUCGUCCAGAACU-CAC ........(-------((..((((((((((((.......)))))....((((((.....))))))...................))))))).(.(((.......))).))))....-... ( -28.40) >consensus AA__CACGU_______UAUAGGUUCUACCGAGAUUUGAACUCGGAUCGCUGGAUUCAAAGUCCAGAGUGCUAACCAUUACACCAUAGAACCGGAUAAAUGCGCUGC_UGCAAAAUUCCAG ....................((((((((((((.......)))))....((((((.....))))))...................)))))))............................. (-24.40 = -24.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:49 2006