Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,280,872 – 3,280,992 |
Length | 120 |
Max. P | 0.590712 |
Location | 3,280,872 – 3,280,992 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.11 |
Mean single sequence MFE | -24.16 |
Consensus MFE | -21.01 |
Energy contribution | -21.20 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.09 |
Mean z-score | -1.41 |
Structure conservation index | 0.87 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.590712 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3280872 120 - 22224390 AAUGAAGGCAUCGGGAAUUAAAUUGUCAGACCAUCGAGGAACAAAACCAGCCAACAACUGGCCAAAAAAAAAAAGCGAGAUAUCGAUCGCGACAAGCAGUAGAUAUUCCCAGAAAGGCCU .....((((.((((((((....(((((...((.....))..........((((.....))))............((((........))))))))).........)))))).))...)))) ( -29.12) >DroSim_CAF1 26276 116 - 1 AAUGAAGGCAUCGGGAAUUAAAUUGUCAGACCAUCGAGGAACAAAACCAUCCAACAACUGCCCCAA----ACAAGCGAGAUAUCGAUCGCGACAAGCAGUAGAUAUUCCCAGAAAGGCCU .....((((.((((((((......(((..........(((.........)))....(((((.....----....((((........)))).....))))).))))))))).))...)))) ( -25.74) >DroEre_CAF1 52997 103 - 1 AAUGAAGGCAUCGGGAAUUAAAUUGUCAGACCAUCGAGGAACAAAAG-------------C--CCA--AAAGAAGUAAGAUAUCGAUCGCGACAAGCAGUGGAUAUUCUCAGAAAGGCCU .....((((.(((((.......((.((........)).)).......-------------)--)).--..........((((((.((.((.....)).)).))))))....))...)))) ( -20.54) >DroYak_CAF1 52773 118 - 1 AAUGAAGGCAUCGGGAAUUAAAUUGUCAGACCAUCGAGGAACAAAACCAUCCAACAACAGCCCCAA--AAAAAAGAGAGAUAUCGAUCGCGACAAGCAGUAGAUAUUCCCAGAAAGGCCU .....((((.((((((((....(((((.(.(.((((((((.........)))...........(..--......).......))))).))))))).........)))))).))...)))) ( -21.22) >consensus AAUGAAGGCAUCGGGAAUUAAAUUGUCAGACCAUCGAGGAACAAAACCAUCCAACAACUGCCCCAA__AAAAAAGCGAGAUAUCGAUCGCGACAAGCAGUAGAUAUUCCCAGAAAGGCCU .....((((.((((((((....(((((...((.....))...................................((((........))))))))).........)))))).))...)))) (-21.01 = -21.20 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:47 2006