Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,267,927 – 3,268,047 |
Length | 120 |
Max. P | 0.652559 |
Location | 3,267,927 – 3,268,047 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.88 |
Mean single sequence MFE | -28.27 |
Consensus MFE | -18.92 |
Energy contribution | -20.03 |
Covariance contribution | 1.11 |
Combinations/Pair | 1.04 |
Mean z-score | -1.69 |
Structure conservation index | 0.67 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.652559 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3267927 120 - 22224390 GUUUUUUUGUUUUUUUUUUGUAUGUGUGUGUCGUCUUGCCGGAUUUUAUGGAAAUUGCGGCAACAUUUCGCACAUAUAUCCUGGGAGUUACUUCUCUUGGCCUACGCAAAAUGCCAAUUU ((..((((((.........(((((((((((..((.((((((((((((...)))))).)))))).))..))))))))))).(..((((......))))..).....)))))).))...... ( -34.10) >DroEre_CAF1 46040 98 - 1 UGUGUUUU-----------------GUGUGUGUUCUGGCCGGAUUUUAUGGGAAUUGUGGCAACAUUUCGCACAUAUAUCUUGGGAGUUACUUCUCUGGGCCUACGCAAAAUGCC----- .(((((((-----------------(((((......((((((((..((((((((..(((....)))))).).)))).))))..((((......)))).)))))))))))))))).----- ( -30.40) >DroYak_CAF1 45117 103 - 1 UAUUUCUU-----------------GUGUGUGUUCUGGACGGAUUUUAUGGGAAUUGUGGCAACAUUUCGCACAUAUAUCUUGGGAGUUACUUCUCUUGGCCUACGCAAAAUGCCAAUUU .......(-----------------(((((((((((....)))........(((..(((....)))))))))))))))....(((((....)))))(((((...........)))))... ( -20.30) >consensus UAUUUUUU_________________GUGUGUGUUCUGGCCGGAUUUUAUGGGAAUUGUGGCAACAUUUCGCACAUAUAUCUUGGGAGUUACUUCUCUUGGCCUACGCAAAAUGCCAAUUU ..........................((((((....((((((((..((((......(((....)))......)))).))))..((((......)))).))))))))))............ (-18.92 = -20.03 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:44 2006