Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,264,682 – 3,264,786 |
Length | 104 |
Max. P | 0.957093 |
Location | 3,264,682 – 3,264,786 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 87.64 |
Mean single sequence MFE | -38.92 |
Consensus MFE | -30.81 |
Energy contribution | -31.75 |
Covariance contribution | 0.94 |
Combinations/Pair | 1.04 |
Mean z-score | -2.46 |
Structure conservation index | 0.79 |
SVM decision value | 1.47 |
SVM RNA-class probability | 0.957093 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3264682 104 - 22224390 CAUAAGUUCCUUGGCGCACCACUGCCAGAACCACUCGGCAG-------ACCAUGUCUGUGCGUCGUCUGUCUGCCCCACCCAACGGGCACAGUGGUGCAAGUGCAUUGUUA ...............(((((((((............(((((-------((.((((....)))).)))))))(((((........))))))))))))))............. ( -38.20) >DroSim_CAF1 16517 105 - 1 CAUAAGUUCCUUGGCGCACCACUGCCAGAACCACUCGGCAGUCUUUUGGCCAUGUCUGUG-----UCUGUCUGCCCCACCCAACGGGCACAGUGGUGCAAGGGCGCC-CUA ............(((((.((((((((((.....)).))))))...(((((((...(((((-----(((((.((.......)))))))))))))))).))))))))))-... ( -39.90) >DroEre_CAF1 42987 104 - 1 CAUAAGUUCCUUGGCGCACCACUGCCAGCACCACUCGGCAGCCUUUCGGCCAUGUCUGUG-----UCUGUCUGCCCCACCCAACAGGCACAGUGGUGCAAGG-CCCC-UCA .....(..((((((((......)))).(((((((..(((((((....)))..))))((((-----(((((.((.......))))))))))))))))))))))-..).-... ( -39.80) >DroYak_CAF1 41817 104 - 1 CAUAAGUUCCUUGGCGCACCAGUGCCAGAACCACUCGGCAGCCUUUUGGCCAUGUCUGUG-----UCUGUCUGCCCCACCCAACGGGCACAGUGGUGCAAGG-CACC-UCA .....((.(((((((((....))))).(.(((((..(((((((....)))..))))((((-----(((((.((.......)))))))))))))))).)))))-.)).-... ( -37.80) >consensus CAUAAGUUCCUUGGCGCACCACUGCCAGAACCACUCGGCAGCCUUUUGGCCAUGUCUGUG_____UCUGUCUGCCCCACCCAACGGGCACAGUGGUGCAAGG_CACC_UCA ...............(((((((((.((((..(((..(((((((....)))..)))).))).....))))..(((((........))))))))))))))............. (-30.81 = -31.75 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:43 2006