Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,264,301 – 3,264,391 |
Length | 90 |
Max. P | 0.894900 |
Location | 3,264,301 – 3,264,391 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 70.67 |
Mean single sequence MFE | -14.25 |
Consensus MFE | -8.98 |
Energy contribution | -8.97 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.62 |
Structure conservation index | 0.63 |
SVM decision value | 0.98 |
SVM RNA-class probability | 0.894900 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3264301 90 + 22224390 -------AUAACAUAAACAUAA---UAUUUAACUUGUUCACAGUGUAGCUGUGCACAGCUUGCACCAACCACCAACACGCCCCUUUUUACGCCUCACUCC -------...............---.................(((((((((....)))).)))))................................... ( -11.00) >DroSim_CAF1 16141 82 + 1 -------AUAACA---ACAUAA---UAUGUAACUUGUUCACAGUGUAGCUG-GAACAGCUUGCAC----CACCACCACGCCCCCUUUUACGCCUCACUCC -------......---......---..(((((.((((((.(((.....)))-)))))).))))).----............................... ( -13.60) >DroEre_CAF1 42554 87 + 1 UCUCUUUUUGAGU--------ACUUUGAGUACCUUGUGCUCAGUGUAGCUG-GAGCAGCUUGCAC----CCCCACCACGCCCCCUUCUACGCCUCACCCC ........((((.--------....(((((((...)))))))((((((..(-(.((....((...----...))....))..))..)))))))))).... ( -19.80) >DroYak_CAF1 41426 92 + 1 UCUCCUUUUGAAA---AAAAAAUAUCUAGUACCUUACUCCCAGUGUAGCUG-GAGCAGCUUGCAC----CCCCACCACGCCCCUUUUUUCGUCUCACCCC .........((((---(((........((((...))))....(((((((((-...)))).)))))----..............))))))).......... ( -12.60) >consensus _______AUAACA___ACAUAA___UAAGUAACUUGUUCACAGUGUAGCUG_GAACAGCUUGCAC____CACCACCACGCCCCCUUUUACGCCUCACCCC ..........................................(((((((((....)))).)))))................................... ( -8.98 = -8.97 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:42 2006