Locus 111

Sequence ID X_DroMel_CAF1
Location 459,168 – 459,263
Length 95
Max. P 0.522186
window147

overview

Window 7

Location 459,168 – 459,263
Length 95
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 83.80
Mean single sequence MFE -14.47
Consensus MFE -10.36
Energy contribution -10.42
Covariance contribution 0.06
Combinations/Pair 1.13
Mean z-score -1.73
Structure conservation index 0.72
SVM decision value -0.02
SVM RNA-class probability 0.522186
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 459168 95 - 22224390
------CCGUGUUUUCCGA-----UUGCCCACC-CCGGCUUUUCACACCCCAUUAGAAAGUCAAUCUGUGAAUGCAUAAAACCUCAUUCACACCCAUAAAGUAUACU
------..((((.....((-----(((((....-..)))(((((...........)))))..))))((((((((..........))))))))..........)))). ( -13.40)
>DroSec_CAF1 61355 96 - 1
------CCGUGUUUUCCGA-----UUGCCCACCCCCGGCUUUUCACACCCCAUUAGAAAGUCAAUCUGUGAAUGCAUAAAACCUCAUUCACACCCAUAAAGUAUACU
------..((((.......-----............(((((((............)))))))....((((((((..........))))))))..........)))). ( -13.00)
>DroSim_CAF1 40388 96 - 1
------CCGUGUUUUCCGA-----UUGCCCACCCCCGGCUUUUCACACCCCAUUAGAAAGUCAAUCUGUGAAUGCAGAAAACCUCAUUCACACCCAUAAAGUAUACU
------..((((.......-----............(((((((............)))))))....((((((((.((.....))))))))))..........)))). ( -15.60)
>DroEre_CAF1 71604 101 - 1
------CCGUGUUUUCCGUCCGGGCUUCCCACCCCCGGCUUUUCACACCCCAUUAGAAAGUCAAUCUGUGAAUGCAUAAAACCUCAUUCACACCCAUAAAGUAUACU
------..((((.....(.(((((.........)))))).....))))..................((((((((..........))))))))............... ( -17.60)
>DroYak_CAF1 59336 88 - 1
------CCGUGUU-------------UCCCACCCCCGGCUUUUCUCACCCCAUUAGAAAGUCAAUCUGUGAAUGCAUAAAACCUCAUUCACACCCAUAAAGCAAACU
------...((((-------------(.........(((((((............)))))))....((((((((..........))))))))......))))).... ( -13.60)
>DroPer_CAF1 95440 101 - 1
ACGGAACCUUCCCUUCCCA-----UCCACCGAC-CACAUUCUUCACACCCCAUUAGAAAGUCAAUCUGUGAAUGGAAAAGGCCUCAUUCACACCCAAAAAGUAAACC
...(((.....((((.(((-----(.(((.((.-.((.((((............)))).))...)).))).))))..)))).....))).................. ( -13.60)
>consensus
______CCGUGUUUUCCGA_____UUGCCCACCCCCGGCUUUUCACACCCCAUUAGAAAGUCAAUCUGUGAAUGCAUAAAACCUCAUUCACACCCAUAAAGUAUACU
....................................(((((((............)))))))....((((((((..........))))))))............... (-10.36 = -10.42 +   0.06) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:35 2006