Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,257,098 – 3,257,214 |
Length | 116 |
Max. P | 0.522646 |
Location | 3,257,098 – 3,257,214 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.45 |
Mean single sequence MFE | -38.05 |
Consensus MFE | -26.55 |
Energy contribution | -26.30 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.10 |
Mean z-score | -1.47 |
Structure conservation index | 0.70 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.522646 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3257098 116 + 22224390 ----UUUGCUGUUGCGUCUGAUAAAUCCAACCUGUUGGCUUCUGGCCAAGAGCAAAGUUUUUGGCGGCGCACAAUUAGCCACACAGUGGUGUCAUAUAUGCAGUGGGCCAAUCUGGCAAU ----....(..((((((.(((((...(((..(((((((((....(((((((((...)))))))))(.....)....))))).))))))))))))...))))))..)(((.....)))... ( -38.40) >DroSim_CAF1 8293 112 + 1 ----UCUGCUGUUGCGGCUGAUAAAU-CAACCUGUUGGCUUCUGGCCAAGAGCAAAGUU-UUGGCGGCGGGCAAUUAGCCA--CAGUGGUGUCAUGUAUGCAGUGGGCCAAUCUGGCAAU ----.(..((((((((((((((....-(((....)))(((..(.(((((((......))-))))).)..))).))))))).--..(((....)))))).))))..)(((.....)))... ( -38.40) >DroEre_CAF1 35277 113 + 1 AUCAGUGGCUGUUGUGGCUGAUAAAU-CAACCGGUUGGCUUCUGGCCAAGAGCUAAGUU-UUGGCGGCGGGCAAUUAGCCA--GA---GUGUCAUGUAUGCAGUGGGCUAACCUGGCAAU ((((((.((....)).))))))....-...(((((((((((((((((((((......))-)))))(((((((.....))).--..---.)))).......))).))))))))).)).... ( -40.80) >DroYak_CAF1 33919 113 + 1 AUCAUUUGCUGUUGUGGCUGAUAAAU-CAACCUGUUGGCUUCUGGCCAAGAGCAAAGUU-UCGGCGGCGGUCAAUUAGCCA--GA---GUGUCAUGUAUGCAGUGGGCUAACCUGGCAAU ......((((((((..(((((....)-)...((.(((((.....))))).))...))).-.))))))))((((.((((((.--.(---.(((.......))).).))))))..))))... ( -34.60) >consensus ____UUUGCUGUUGCGGCUGAUAAAU_CAACCUGUUGGCUUCUGGCCAAGAGCAAAGUU_UUGGCGGCGGGCAAUUAGCCA__CA___GUGUCAUGUAUGCAGUGGGCCAACCUGGCAAU ..........(((((((.((.......)).)).((((((((((((((((.(((...))).)))))(((.........)))....................))).))))))))...))))) (-26.55 = -26.30 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:38 2006