Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,253,941 – 3,254,061 |
Length | 120 |
Max. P | 0.757454 |
Location | 3,253,941 – 3,254,061 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.08 |
Mean single sequence MFE | -36.60 |
Consensus MFE | -31.23 |
Energy contribution | -31.47 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.03 |
Mean z-score | -1.74 |
Structure conservation index | 0.85 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.757454 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3253941 120 + 22224390 ACUCAAAAUUAGGCCAUAUCCCAUUACCAAGGCUUAGAAUCCAAUGAUCCCAACUACCUGAGCUCGUUCGCUAUUGUUAAUUGGGCAUGGGAUCGGAUUGAAACGGUGAUCUGGGAUGUG ..............((((((((((((((..((........))..((((((((.(.....).(((((((.((....)).)).))))).)))))))).........)))))..))))))))) ( -35.10) >DroSim_CAF1 5297 116 + 1 ACUGA-AAUUAGGCCAUAUCCCAUUACCAAGGCUUAGAAUCC---GAUCCGAACUACCUGAGCUCGAUCGCUAUUGUUAAUUGGGCAUGGGAUCGGAUUGAAUCGGUGAUCUGGGCUGUG .....-........((((.(((((((((..(..(((..((((---(((((...(.....).(((((((.((....))..)))))))...))))))))))))..))))))..)))).)))) ( -34.00) >DroEre_CAF1 30501 116 + 1 ACAGA-AAUUAGGCCAUAUCCCAUUACCAAGGCUUAGAAUAC---GAUCCGAACUACCUGAGCUUGAUCGCUAUUGUUAAUUGGGCAUGGGAUCGGCUUGAGUCGGUGAUCUGGGAUGUG .....-........((((((((((((((..(((((((....(---(((((...(.....).(((..((.((....))..))..)))...))))))..))))))))))))..))))))))) ( -37.60) >DroYak_CAF1 30251 116 + 1 ACAGA-AAUUAGGCCAUAUCCCAUUACCAAGGCUUAGAAUCC---GAUCCGAACUACCUGAGCUUGAUCGCUAUUGUUAAUUGGGCAUGGGAUCGGCUUGAGUUGGUGAUCUGGGAUGUG .....-........(((((((((((((((..((((((...((---(((((...(.....).(((..((.((....))..))..)))...))))))).))))))))))))..))))))))) ( -39.70) >consensus ACAGA_AAUUAGGCCAUAUCCCAUUACCAAGGCUUAGAAUCC___GAUCCGAACUACCUGAGCUCGAUCGCUAUUGUUAAUUGGGCAUGGGAUCGGAUUGAAUCGGUGAUCUGGGAUGUG ..............((((((((((((((..(((((((....................)))))))(((((.((((.(((.....)))))))))))).........)))))..))))))))) (-31.23 = -31.47 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:37 2006