Locus 1104

Sequence ID X_DroMel_CAF1
Location 3,250,998 – 3,251,108
Length 110
Max. P 0.650155
window1785

overview

Window 5

Location 3,250,998 – 3,251,108
Length 110
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.98
Mean single sequence MFE -31.92
Consensus MFE -28.38
Energy contribution -28.82
Covariance contribution 0.44
Combinations/Pair 1.04
Mean z-score -1.23
Structure conservation index 0.89
SVM decision value 0.24
SVM RNA-class probability 0.650155
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3250998 110 + 22224390
AUCCU---GGUCAAUUGAAU-GGUCCGAUUCGAAUGAUUCUUGGCAGCAGCAUGACAAGUGCAAUUUGGCCAAGAAAGCGUUUCCUGUCGCAUGUGGCAUUAAUAAAAGUGGAC------
.(((.---(((((.((((((-......)))))).)))((((((((....((((.....))))......)))))))).......))(((((....)))))...........))).------ ( -27.70)
>DroSec_CAF1 20556 107 + 1
CUCCU---GGUCAAUUGAAU-GGUCCGAUUCGAACGCUUCUUGCCA---GCAUGACAAGUGCAAUUUGGCCAAGAAAGCGUUUCCUGUCGCAUGUGGCAUUAAUAAAUGUGGAC------
.(((.---(..((......)-)..)((((..(((((((((((((((---((((.....))))....))).)))).))))))))...))))......(((((....)))))))).------ ( -29.80)
>DroSim_CAF1 2107 107 + 1
CUCCU---GGUCAAUUGAAU-GGUCCGAUUCGAACGCUUCUUGGCA---GCAUGACAAGUGCAAUUUGGCCAAGAAAGCGUUUCCUGUCGCAUGUGGCAUUAAUAAAUGUGGAC------
.(((.---(..((......)-)..)((((..((((((((((((((.---((((.....))))......)))))).))))))))...))))......(((((....)))))))).------ ( -32.00)
>DroEre_CAF1 27501 108 + 1
CUCCU---GGUCAAUUGACUAGGUCCGAUUCGAACGCUUCUUGGCA---GCAUGACAAGUGCAAUUUGGCCAAGAAAGCGUUUCCUGUCGCAUGUGGCAUUAAUAAAAGUGGAC------
..(((---((((....)))))))((((((..((((((((((((((.---((((.....))))......)))))).))))))))...)))((.....))............))).------ ( -39.10)
>DroYak_CAF1 27294 116 + 1
CUCCUGCUGGCCAAUUGAAU-GGUCCGAUUCGAACGCUUCUUGGCA---GCAUGACAAGUGCAAUUUGGCCAAGAAACCGUUUCCUGUCGCAUGUUGCAUUAAUAAAAGUGGACGUAAAG
.....((.(((((......)-)))).(((..(((((.((((((((.---((((.....))))......))))))))..)))))...)))))(((((.((((......))))))))).... ( -31.00)
>consensus
CUCCU___GGUCAAUUGAAU_GGUCCGAUUCGAACGCUUCUUGGCA___GCAUGACAAGUGCAAUUUGGCCAAGAAAGCGUUUCCUGUCGCAUGUGGCAUUAAUAAAAGUGGAC______
......................(((((((..((((((((((((((....((((.....))))......)))))).))))))))...)))((.....))............))))...... (-28.38 = -28.82 +   0.44) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:35 2006