Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,248,382 – 3,248,484 |
Length | 102 |
Max. P | 0.644994 |
Location | 3,248,382 – 3,248,484 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 78.73 |
Mean single sequence MFE | -32.25 |
Consensus MFE | -17.14 |
Energy contribution | -17.45 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.30 |
Mean z-score | -2.15 |
Structure conservation index | 0.53 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.644994 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3248382 102 + 22224390 GAGGUCGGGGUUGCAACAGGUGCAAUUCG----UCGAUCGUUGAAGUUAACAGUGUUGAAAUGAAGGCGAAUUAACAUU-GUACCCUUCCACGAAUGCGGGCCUUUA-- ((((((.((((((((.....)))))))).----.((.((((.((((...((((((((((..((....))..))))))))-))...)))).))))...))))))))..-- ( -33.90) >DroEre_CAF1 24889 101 + 1 GGGUUCGGGGUUGCAACAGGUGCAACUCG----GCGAUCGAUGAAGUUAACAGUGUUGAAAUGAAGGCGAAUUAACAUU-GUACCCUUUCUCGAAUGCGGGCUCU-A-- ((((((.((((((((.....)))))))).----(((.((((.((((...((((((((((..((....))..))))))))-))...)))).)))).))))))))).-.-- ( -37.40) >DroYak_CAF1 24516 101 + 1 GAGGUAGGGGUUGCAACAGGUGCAACUCG----CCGAUCGAUGAAGUUAACAGUGUUGAAAUGAAGGCGAAUUAACAUU-GUACCCUUCCCUGAAUGCGGGCUAU-A-- ...((((((((((((.....)))))))).----(((.(((..((((...((((((((((..((....))..))))))))-))...))))..)))...))).))))-.-- ( -30.60) >DroAna_CAF1 31726 106 + 1 CAGGCA--ACUUGCAACAGGUGCAAGUUGAGGUCCAAUCGAUGAAGUUAACAGUGUUGAAAUGAAGGCACAUUAUCAUGAAUGCCCUGGCUCAUAAAAAGGGUAU-AUU ..((((--(((((((.....)))))))))....))....(((((.(....).(((((........))))).)))))....(((((((...........)))))))-... ( -27.10) >consensus GAGGUAGGGGUUGCAACAGGUGCAACUCG____CCGAUCGAUGAAGUUAACAGUGUUGAAAUGAAGGCGAAUUAACAUU_GUACCCUUCCUCGAAUGCGGGCUAU_A__ ..((...((((((((.....)))))))).....))..((((.((((...((((((((((..((....))..)))))))).))...)))).))))............... (-17.14 = -17.45 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:33 2006