Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,239,235 – 3,239,332 |
Length | 97 |
Max. P | 0.694802 |
Location | 3,239,235 – 3,239,332 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 92.52 |
Mean single sequence MFE | -23.77 |
Consensus MFE | -19.83 |
Energy contribution | -20.82 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.67 |
Structure conservation index | 0.83 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.694802 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3239235 97 - 22224390 AUAAAACCCAACUGAUGGUAAGUAACCGCAACGAAAUCGAAACCUGCAGAAGAAAUGCCUGAGUGGGCAUGAGUCAGAUUCUUUCAGGAGAAUCAAC ...........(((..(((..((....))..((....))..)))..)))..((.((((((....))))))...)).(((((((....)))))))... ( -22.00) >DroSec_CAF1 7956 93 - 1 AUAAAACCCAACUGGUGGC----AACCGCAACGAAAUCGAAACCUGCAGAAGAAAUGCCUGAGUGGGCAUGAGUCAGAUUCUUUCAGGAGAAUCAAC ...........(((((((.----..))))..((....)).......)))..((.((((((....))))))...)).(((((((....)))))))... ( -23.00) >DroEre_CAF1 15799 95 - 1 ACAAAACCCGACUGGUGGU--GUAACCGCAACGAAAUCGAAACCUGCAGCAGAAAUGCCUGAGUGGGCAUGAGUCAGAUUCUUUCAGGAGAAUCAUC .........((((.(((((--(....)))..((....))...((..(.(((....)))....)..))))).)))).(((((((....)))))))... ( -26.00) >DroYak_CAF1 15572 90 - 1 AUAAAACCCGACUGG-------UAACCGCAACGAAAUCGAAACCUGCAGAAGAAAUGCCUGAGUGGGCAUGAGUCAGAUUCUUUCAGGAGAAUCAAC .........((((.(-------(..((((..((....)).......(((.(....)..))).))))..)).)))).(((((((....)))))))... ( -24.10) >consensus AUAAAACCCAACUGGUGGU___UAACCGCAACGAAAUCGAAACCUGCAGAAGAAAUGCCUGAGUGGGCAUGAGUCAGAUUCUUUCAGGAGAAUCAAC ...........(((((((.......))))..((....)).......)))..((.((((((....))))))...)).(((((((....)))))))... (-19.83 = -20.82 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:31 2006