Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 454,366 – 454,480 |
Length | 114 |
Max. P | 0.989188 |
Location | 454,366 – 454,480 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.27 |
Mean single sequence MFE | -19.02 |
Consensus MFE | -18.43 |
Energy contribution | -18.03 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.07 |
Mean z-score | -1.59 |
Structure conservation index | 0.97 |
SVM decision value | 2.15 |
SVM RNA-class probability | 0.989188 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 454366 114 + 22224390 UAAA------UUUAUCCAUUCCUGGAUAUCAGACCAAUGCCCAUGACAAAAGAAAGCUACAUUUCCUUCUAAAUAAAAAUCAAUUUGCAUAAUACUAGUGUCUCUUGUCAAGCGCAUUUA ....------..((((((....)))))).......(((((.(.((((((.(((..((((..........(((((........)))))........)))).))).)))))).).))))).. ( -19.47) >DroSec_CAF1 56587 114 + 1 UAUA------UUUAUCCAUUCCUGGAUAUCAGACCAAUGCCCAUGACAAAAGAAAGCUACAUUUCCUUCUGAAUAAAAAUCAAUUUGCAUAAUACUAGUGUCUCUUGUCAAGCGCAUUUA ....------..((((((....)))))).......(((((.(.((((((.(((..((((.(((......(((.......)))........)))..)))).))).)))))).).))))).. ( -18.84) >DroSim_CAF1 35623 114 + 1 UAUA------UUUAUCCAUUCCUGGAUAUCAGACCAAUGCCCAUGACAAAAGAAAGCUACAUUUCCUUCUGAAUAAAAAUCAAUUUGCAUAAUACUAGUGUCUCUUGUCAAGCGCAUUUA ....------..((((((....)))))).......(((((.(.((((((.(((..((((.(((......(((.......)))........)))..)))).))).)))))).).))))).. ( -18.84) >DroEre_CAF1 66744 114 + 1 UGCA------UAUAUCCGCUCCUGGAUAUCAGACCAAUGCCCAUGACAAAAGAAAACUACAUGUCCUUCUGAAUAAAAAACAAUUUGCAUUAUACUAGUGUCUCUUGUCAAGCGCAUUUA ....------.(((((((....)))))))......(((((.(.((((((.((((.((.....))..))))................((((((...))))))...)))))).).))))).. ( -19.10) >DroYak_CAF1 54356 120 + 1 UACACACGAGUAUAUCCACUCCCGGAUAUCAGACCAAUGCCCAUGACAAAAGAAAACUACAUUUCCUUCUGAAUAAAAAACCAUUUGCAUUACACUAGUGUCUCUUGUCAAGCGCAUUUA .........(.((((((......))))))).....(((((.(.((((((.(((..((((...........((((........)))).........)))).))).)))))).).))))).. ( -18.85) >consensus UACA______UUUAUCCAUUCCUGGAUAUCAGACCAAUGCCCAUGACAAAAGAAAGCUACAUUUCCUUCUGAAUAAAAAUCAAUUUGCAUAAUACUAGUGUCUCUUGUCAAGCGCAUUUA ............(((((......))))).......(((((.(.((((((.(((..((((..........(((((........)))))........)))).))).)))))).).))))).. (-18.43 = -18.03 + -0.40)
Location | 454,366 – 454,480 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.27 |
Mean single sequence MFE | -29.38 |
Consensus MFE | -24.54 |
Energy contribution | -24.46 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.07 |
Mean z-score | -2.04 |
Structure conservation index | 0.84 |
SVM decision value | 1.86 |
SVM RNA-class probability | 0.980454 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 454366 114 - 22224390 UAAAUGCGCUUGACAAGAGACACUAGUAUUAUGCAAAUUGAUUUUUAUUUAGAAGGAAAUGUAGCUUUCUUUUGUCAUGGGCAUUGGUCUGAUAUCCAGGAAUGGAUAAA------UUUA ..(((((.(.((((((((((....(((....((((..((..(((((....)))))..))))))))).)))))))))).).))))).......((((((....))))))..------.... ( -27.50) >DroSec_CAF1 56587 114 - 1 UAAAUGCGCUUGACAAGAGACACUAGUAUUAUGCAAAUUGAUUUUUAUUCAGAAGGAAAUGUAGCUUUCUUUUGUCAUGGGCAUUGGUCUGAUAUCCAGGAAUGGAUAAA------UAUA ..(((((.(.((((((((((..(((.((((...(...((((.......))))...).)))))))...)))))))))).).))))).......((((((....))))))..------.... ( -28.40) >DroSim_CAF1 35623 114 - 1 UAAAUGCGCUUGACAAGAGACACUAGUAUUAUGCAAAUUGAUUUUUAUUCAGAAGGAAAUGUAGCUUUCUUUUGUCAUGGGCAUUGGUCUGAUAUCCAGGAAUGGAUAAA------UAUA ..(((((.(.((((((((((..(((.((((...(...((((.......))))...).)))))))...)))))))))).).))))).......((((((....))))))..------.... ( -28.40) >DroEre_CAF1 66744 114 - 1 UAAAUGCGCUUGACAAGAGACACUAGUAUAAUGCAAAUUGUUUUUUAUUCAGAAGGACAUGUAGUUUUCUUUUGUCAUGGGCAUUGGUCUGAUAUCCAGGAGCGGAUAUA------UGCA ..(((((.(.((((((((((.((((((.....))....((((((((.....))))))))..))))..)))))))))).).))))).((...((((((......)))))).------.)). ( -32.80) >DroYak_CAF1 54356 120 - 1 UAAAUGCGCUUGACAAGAGACACUAGUGUAAUGCAAAUGGUUUUUUAUUCAGAAGGAAAUGUAGUUUUCUUUUGUCAUGGGCAUUGGUCUGAUAUCCGGGAGUGGAUAUACUCGUGUGUA ..(((((.(.((((((((((.((((((.....)).....(((((((.......))))))).))))..)))))))))).).))))).......((..((.(((((....))))).))..)) ( -29.80) >consensus UAAAUGCGCUUGACAAGAGACACUAGUAUUAUGCAAAUUGAUUUUUAUUCAGAAGGAAAUGUAGCUUUCUUUUGUCAUGGGCAUUGGUCUGAUAUCCAGGAAUGGAUAAA______UAUA ..(((((.(.((((((((((..(((((.....)).............(((....)))....)))...)))))))))).).))))).......((((((....))))))............ (-24.54 = -24.46 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:34 2006