Locus 11

Sequence ID X_DroMel_CAF1
Location 27,529 – 27,640
Length 111
Max. P 0.959255
window12

overview

Window 2

Location 27,529 – 27,640
Length 111
Sequences 3
Columns 112
Reading direction reverse
Mean pairwise identity 94.03
Mean single sequence MFE -29.45
Consensus MFE -26.39
Energy contribution -26.83
Covariance contribution 0.45
Combinations/Pair 1.04
Mean z-score -2.96
Structure conservation index 0.90
SVM decision value 1.50
SVM RNA-class probability 0.959255
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 27529 111 - 22224390
AGCUCCCUUAAAAAAGUUUUCAGAAUGCCAGUGACCGAAUGGAUGUCCACCUCGCGUAGCAACUGCUCCGCCUCAUAGGCAUCUGAAGAAAAUAAAAUUAAGUG-CAAAUUA
.((...(((((.....((((((((.((((.((((..((.(((....)))..))(((.(((....))).))).)))).))))))))))))........))))).)-)...... ( -32.72)
>DroSec_CAF1 14721 111 - 1
AGCUCCCUUAAAAAAGUUUUCAGAAUGCCAGUGACCGAAUGGAUGUCCACCUCUCGUAGCAACUGCUCCGCCUCAUAGGCAUCUGAAGAAAAUAAAAUUAAGUG-CAAAUUA
.((...(((((.....((((((((.((((.((((..((.(((....)))..)).((.(((....))).))..)))).))))))))))))........))))).)-)...... ( -28.22)
>DroYak_CAF1 9209 112 - 1
AGCUCUCUUAGAAAAGUCUUCAAAAUGCCAGUGACCGAAUGGAUGUCCACCUCGCGUAGCAACUGCUCCGCCUCAUAGGCAUCUGAAGAAUAUAAAAUAAAACGACAAAUUA
................((((((..(((((.((((..((.(((....)))..))(((.(((....))).))).)))).))))).))))))....................... ( -27.40)
>consensus
AGCUCCCUUAAAAAAGUUUUCAGAAUGCCAGUGACCGAAUGGAUGUCCACCUCGCGUAGCAACUGCUCCGCCUCAUAGGCAUCUGAAGAAAAUAAAAUUAAGUG_CAAAUUA
................((((((((.((((.((((..((.(((....)))..))(((.(((....))).))).)))).))))))))))))....................... (-26.39 = -26.83 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:07 2006