Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,223,348 – 3,223,455 |
Length | 107 |
Max. P | 0.595188 |
Location | 3,223,348 – 3,223,455 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 91.59 |
Mean single sequence MFE | -23.84 |
Consensus MFE | -22.43 |
Energy contribution | -22.43 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.47 |
Structure conservation index | 0.94 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.595188 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3223348 107 - 22224390 CC--CAUACUCCUAUACCGAUACUUAGAUACUUAGAUACUUCUCCACUUCAGACCCCCGACGUCU----CGUCAAUGUUGCACUUGAGGUUAUCGUCGGGGAAAAUCGUUAAA ..--.............((((.....((.....(((....))).....))....((((((((...----(.((((........)))).)....))))))))...))))..... ( -24.30) >DroSec_CAF1 32245 109 - 1 CCUCUAUACUCCUAUACCGAUACUUAGAUACUUAGAUACUUCUCCACUUCAGACCCCCGACGUCU----CGUCAAUGUUGCACUUGAGGUUAUCGUCGGGGAAAAUCGUUAAA .................((((.....((.....(((....))).....))....((((((((...----(.((((........)))).)....))))))))...))))..... ( -24.30) >DroYak_CAF1 37586 105 - 1 CC--UAUAC------ACCGAUACUCAGAUACUUAGAUACUUCUCCACUUCAGACCCCCGACGUCUCGCUCGUCAAUGUUGCACUUGAGGUUAUCGUCGGGGAAAAUCGUUAAA ..--.....------..((((.....((.....(((....))).....))....((((((((...(.((((.............)))))....))))))))...))))..... ( -22.92) >consensus CC__UAUACUCCUAUACCGAUACUUAGAUACUUAGAUACUUCUCCACUUCAGACCCCCGACGUCU____CGUCAAUGUUGCACUUGAGGUUAUCGUCGGGGAAAAUCGUUAAA .................((((.....((.....(((....))).....))....((((((((.......(.((((........)))).)....))))))))...))))..... (-22.43 = -22.43 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:27 2006