Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,223,037 – 3,223,153 |
Length | 116 |
Max. P | 0.651329 |
Location | 3,223,037 – 3,223,153 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 81.07 |
Mean single sequence MFE | -23.40 |
Consensus MFE | -13.27 |
Energy contribution | -13.90 |
Covariance contribution | 0.63 |
Combinations/Pair | 1.07 |
Mean z-score | -2.11 |
Structure conservation index | 0.57 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.651329 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3223037 116 - 22224390 CCGUUCUGCCGUCUCUUUCUGAUCGCCAAGAGCAUGACCUUUAGCGCUGGCGACCAACAAAAAUACAUACAUGCAUAUGUAUAUCAGCAAACUUCCCAAGACAGCACUAAACAAAU ..(((.(((.((((.....((.((((((.(.((..........)).))))))).))......(((((((......)))))))................)))).)))...))).... ( -24.20) >DroSec_CAF1 31949 102 - 1 CUGUGCUGCCGUCUCUUUCUGAUCGCCAAGAGCGUGACCUUUCGCGCUGGCGACCAACAAAAAUA--------------UAUAUCAGCAAACUUCCCAAGACAGCACUAAACCAAU ..((((((.(.....(((((((((((((...((((((....))))))))))))............--------------....)))).)))........).))))))......... ( -26.01) >DroEre_CAF1 33861 102 - 1 --------CCCUAUCUUUAUGCUCGCCAAGAGCGUGACCUUUUGCGCUGGCGACCAACAAAAAUAU------ACAUAUGUAUAUCAGCAAACUUCCCAAGACUGCACUAAACCAAU --------...........((.((((((...(((..(....)..))))))))).))......((((------((....))))))..(((..((.....))..)))........... ( -21.10) >DroYak_CAF1 37298 102 - 1 CCGUACAGCCCUCUCUUUUUGCCCGCCAAGAGCGUGACCUUUUGCGCUGGCGACCAACAAAAAUAU--------------AUAUCAGCAAAAUGCCCAAGACGGCACUAAACCAAU .......(((.(((....(((((.((((((((......)))))).)).))))).............--------------......((.....))...))).)))........... ( -22.30) >consensus CCGU_CUGCCCUCUCUUUCUGAUCGCCAAGAGCGUGACCUUUUGCGCUGGCGACCAACAAAAAUAU_____________UAUAUCAGCAAACUUCCCAAGACAGCACUAAACCAAU ...................((.((((((...((((((....)))))))))))).))............................................................ (-13.27 = -13.90 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:26 2006