Locus 1095

Sequence ID X_DroMel_CAF1
Location 3,221,189 – 3,221,285
Length 96
Max. P 0.858923
window1775

overview

Window 5

Location 3,221,189 – 3,221,285
Length 96
Sequences 4
Columns 109
Reading direction reverse
Mean pairwise identity 86.21
Mean single sequence MFE -18.97
Consensus MFE -18.59
Energy contribution -18.02
Covariance contribution -0.56
Combinations/Pair 1.19
Mean z-score -1.48
Structure conservation index 0.98
SVM decision value 0.82
SVM RNA-class probability 0.858923
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3221189 96 - 22224390
------------GGGGCUAACCACUCAAUACGAGGCGAAAGAUUAAUGGACAAAUCGAACCGAAAGCCCCGAAAAUCGAAAUUAAGUUUCUACAUAAUGAACAAAAUG-
------------((((((..((((((.....))).(....).....))).....(((...))).)))))).......(((((...)))))..................- ( -19.40)
>DroSec_CAF1 30256 97 - 1
------------GGGGCUAACCACUCAAUACGAGGCGAAAGAUUAAUGGACAAAUCGAACCGAAAGCCCCGAAAAUCGAAACAAAGUUUCUACAUAAUGAACAAAAUGA
------------((((((..((((((.....))).(....).....))).....(((...))).)))))).......(((((...)))))................... ( -20.70)
>DroEre_CAF1 32146 104 - 1
-----GAAGAAGGGGGUUAACCACUCAAUACGAGGCGAAAGAUUAAUGGUCAAAUCGAACCGAAAACCCCGAAUAUCGAAACAAAGUCUCUACAUAAUGAACAAAAUGU
-----.......((((((.(((((((.....))).(....).....))))....(((...))).))))))....................................... ( -16.60)
>DroYak_CAF1 35566 105 - 1
GAGGGGAAAGAGGGGGUUGACCACUUAAUACGAGGCGAAAGAUUAAUGGACAAAUCGAACCGAAAGCCCCGAAAAUCGAAACAAAGUUUCUACAUAAUGAACAAA----
..((((.....((.((((..((((((.....))).(....).....)))...))))...)).....)))).......(((((...)))))...............---- ( -19.20)
>consensus
____________GGGGCUAACCACUCAAUACGAGGCGAAAGAUUAAUGGACAAAUCGAACCGAAAGCCCCGAAAAUCGAAACAAAGUUUCUACAUAAUGAACAAAAUG_
............((((((..((((((.....))).(....).....))).....(((...))).)))))).......(((((...)))))................... (-18.59 = -18.02 +  -0.56) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:25 2006