Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,219,284 – 3,219,420 |
Length | 136 |
Max. P | 0.919709 |
Location | 3,219,284 – 3,219,382 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 94.92 |
Mean single sequence MFE | -22.88 |
Consensus MFE | -19.79 |
Energy contribution | -20.35 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.05 |
Mean z-score | -2.33 |
Structure conservation index | 0.87 |
SVM decision value | 1.13 |
SVM RNA-class probability | 0.919709 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3219284 98 + 22224390 CACCAUCGCCUAUCUUGCCCUCUCUGC-UUUCCCAUAUUCCUUCGCCUUCUGGGCGCGUGGGAAAAUAGAAACUCAACCGCAGAGUUUAAUUUCGUUUU .....................((((((-((((((((.......((((.....)))).))))))))...(.....)....)))))).............. ( -22.10) >DroSec_CAF1 28307 97 + 1 CUCCAUCGCCUAUCUGGCCCUCUCUUU-UUUCCCAUAUUCCUUCGCCUUCUGUGCGCGUGGGAAAAUAGAAACUCAACCGCAGAGUUUUAUUUCGUUU- .......(((.....)))....(((.(-((((((((.......((((....).))).))))))))).)))(((((.......)))))...........- ( -21.60) >DroEre_CAF1 30218 98 + 1 CUCCAUCGCCUAUCUGGCCCUCACUUU-UUUCCCAUAUUCCUUCGCCUUCUGGGCGCGUGGGAAAAUAGAAACUUAACCGCAGAGUUUUAUUUCGUUUU .......(((.....))).....((.(-((((((((.......((((.....)))).))))))))).))((((((.......))))))........... ( -22.90) >DroYak_CAF1 33525 99 + 1 CUCCAUCGCCUAUCUGGCCCUCUCUUUUUUUCCCAUAUUCCUUCGCCUUCUGGGCGCGUGGGAAAAUAGAAACUCAACCGCAGAGUUUUAUUUCGUUUU .......(((.....))).........(((((((((.......((((.....)))).)))))))))..(((((((.......))))))).......... ( -24.90) >consensus CUCCAUCGCCUAUCUGGCCCUCUCUUU_UUUCCCAUAUUCCUUCGCCUUCUGGGCGCGUGGGAAAAUAGAAACUCAACCGCAGAGUUUUAUUUCGUUUU .......(((.....)))..........((((((((.......((((.....)))).))))))))...(((((((.......))))))).......... (-19.79 = -20.35 + 0.56)
Location | 3,219,307 – 3,219,420 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.48 |
Mean single sequence MFE | -19.16 |
Consensus MFE | -12.74 |
Energy contribution | -13.26 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.10 |
Mean z-score | -1.62 |
Structure conservation index | 0.66 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.574267 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3219307 113 - 22224390 CUCAAAACAGAAAAAACAAAAAACACGAGCAAAAUAA--CAAAACGAAAUUAAACUCUGCGGUUGAGUUUCUAUUUUCCCACGCGCCCAGAAGGCGAAGGAAUAUGGGAAA-GCAG---- (((((..((((..........................--................))))...)))))(((((((.((((....((((.....))))..)))).))))))).-....---- ( -21.35) >DroSec_CAF1 28330 98 - 1 CUCAA--CAG----------AAACACGAGCAAAAUA-----AAACGAAAUAAAACUCUGCGGUUGAGUUUCUAUUUUCCCACGCGCACAGAAGGCGAAGGAAUAUGGGAAA-AAAG---- (((((--(..----------...((.(((.......-----.............)))))..))))))(((((((.((((..(((.(......))))..)))).))))))).-....---- ( -20.05) >DroEre_CAF1 30241 103 - 1 CUCAA--CAA----------AAACACGAGCAAAAUAAAAUAAAACGAAAUAAAACUCUGCGGUUAAGUUUCUAUUUUCCCACGCGCCCAGAAGGCGAAGGAAUAUGGGAAA-AAAG---- .....--...----------.........................(((((..((((....))))..)))))..((((((((..((((.....))))........)))))))-)...---- ( -17.80) >DroYak_CAF1 33548 102 - 1 CUCAA--CAA----------AAACACGAGCAAAAUAA--CAAAACGAAAUAAAACUCUGCGGUUGAGUUUCUAUUUUCCCACGCGCCCAGAAGGCGAAGGAAUAUGGGAAAAAAAG---- (((((--(..----------...((.(((........--...............)))))..))))))(((((((.((((....((((.....))))..)))).)))))))......---- ( -22.40) >DroAna_CAF1 45449 102 - 1 AAAUA--CAA----------AAUAA---GGGAAAAAA--CAAAACGAUAUACAACUUUGCGGUUGAGUUUCUAUUUUCCCACGCGCUGAGGAGGUGAAGAAAUAAGAGAAA-AAUAAAAC .....--...----------.....---(((((((..--..((((......(((((....))))).))))...)))))))...((((.....))))...............-........ ( -14.20) >consensus CUCAA__CAA__________AAACACGAGCAAAAUAA__CAAAACGAAAUAAAACUCUGCGGUUGAGUUUCUAUUUUCCCACGCGCCCAGAAGGCGAAGGAAUAUGGGAAA_AAAG____ .............................................(((((..((((....))))..)))))...(((((((..((((.....))))........)))))))......... (-12.74 = -13.26 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:25 2006