Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,210,657 – 3,210,766 |
Length | 109 |
Max. P | 0.561025 |
Location | 3,210,657 – 3,210,766 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.86 |
Mean single sequence MFE | -24.18 |
Consensus MFE | -16.65 |
Energy contribution | -16.77 |
Covariance contribution | 0.13 |
Combinations/Pair | 1.10 |
Mean z-score | -1.54 |
Structure conservation index | 0.69 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.561025 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3210657 109 + 22224390 AAUCACAAAUAAAC---ACCAAACUUGCACGAUCCCCAAAAUGAUUUUGAGAAAUGCAUUUCAGCCUAUCAGCUGCCA-------CUGUAAAUAUUUACA-UGUGCAGCCGUGGAAAAUU ..............---.......((.((((..........((((.((((((......))))))...))))(((((((-------.(((((....)))))-)).))))))))).)).... ( -22.60) >DroSec_CAF1 19958 109 + 1 AAUCACAAAUAAACCGAGCCAACCUUGCGCGAUCCC--AGAUGAU-UUGAGGAAUGCAUGUCAGCCUAUCAGCUGC-A-------CUGUAAAUAUUUACAGUGUGCAGCCGUGGAAAAUU ..................(((...(((((((.((((--(((...)-))).))).)))....((((......))))(-(-------((((((....)))))))).))))...)))...... ( -27.40) >DroEre_CAF1 21916 118 + 1 AAUCACAAAUAAACCGAGACAACCUUGCACGAUCCCA-AAAUGAU-UUGAGAAAUGCAUGUCAGCAUAUCAGCUGCAGCAAAGUCUUGUAAAUAUUUACAGUGUGCAGACGUGGAAAAUU ..((((.........(((.....)))(((((......-.......-..((((..(((.((.((((......)))))))))...))))((((....))))..)))))....))))...... ( -23.90) >DroYak_CAF1 24817 118 + 1 AAUCACAAAUAAACCGACCCAACCUUGCGCGAUACCC-AAAUGAU-UUGAGAAAUGCAUGUCAGCAUAUCAGCUGCACCAAAAUCUUGUAAAUAUUUACAGUGUGCAGCCGUGGAAAAUU ........................((.((((......-.......-....((.((((......)))).)).(((((((.......((((((....)))))).))))))))))).)).... ( -22.80) >consensus AAUCACAAAUAAACCGAGCCAACCUUGCACGAUCCCC_AAAUGAU_UUGAGAAAUGCAUGUCAGCAUAUCAGCUGCAA_______CUGUAAAUAUUUACAGUGUGCAGCCGUGGAAAAUU ..................(((...(((((((..............................((((......))))..........((((((....)))))))))))))...)))...... (-16.65 = -16.77 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:21 2006